Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq501 230 3e-55 seq933 111 2e-19 >seq501 Length=177797 Score = 230 bits (254), Expect = 3e-55 Identities = 1159/1830 (63%), Gaps = 39/1830 (2%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 148664 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 148605 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 148604 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 148545 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || ||| | || || || ||||||||| ||||| || || ||||| | | Sbjct 148544 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 148488 Query 113745 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 113801 || | | || | |||||||| ||||| |||| | ||| | || || | Sbjct 148487 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 148428 Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 113858 | | ||| || ||||| || ||| || | | |||| | | ||||||| | | Sbjct 148427 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 148371 Query 113859 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 113918 ||||| ||||| || | ||| |||| || ||| ||||| || ||||| Sbjct 148370 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACT 148311 Query 113919 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 113978 | || || ||| || | | || || |||| ||||| ||||| ||||||||||||| Sbjct 148310 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 148251 Query 113979 TACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038 | |||||||| || | |||| ||| || |||||||| || | ||| || ||| |||| Sbjct 148250 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 148191 Query 114039 GACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 114098 ||| | | | | || | ||||| || ||||||||||| || | | || Sbjct 148190 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 148131 Query 114099 CCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGT 114158 | | |||||| || ||||||| || || || || | || || ||||| | |||| || Sbjct 148130 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 148071 Query 114159 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 114216 | || ||||| ||| ||||| | | | | | | ||||| || || || ||||| Sbjct 148070 AGGGACCCTCCTCCTTAGCCAA--CTGCACCGACATAGTAAGGGCAGCATGGTAGATTGT 148013 Query 114217 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA 114276 ||| || || || | | || || || || || | | ||| Sbjct 148012 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 147953 Query 114277 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 147952 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 147893 Query 114337 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 114396 || || || || || || || || ||| || | || || || || Sbjct 147892 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 147833 Query 114397 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-- 114454 |||||||| |||| || || ||||| | | | || | | | ||| | | | Sbjct 147832 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 147776 Query 114455 -ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 114513 || | | || | ||| | || ||||| |||||||||| | ||| || | | Sbjct 147775 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 147716 Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 |||||| || || || || || | || || || ||||| |||| |||||| || | Sbjct 147715 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTG-GT 147657 Query 114574 TGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 114632 || |||| ||| ||||||||||| |||||| | || | || ||||| ||||| | Sbjct 147656 TGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 147597 Query 114633 ACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 114690 || ||| || || | ||||| | ||| | || | ||| || |||| | Sbjct 147596 CCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG-ACCCTTGCCCAT- 147539 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 || |||||||| ||| | ||| || ||||| ||||| | || | || || || Sbjct 147538 CTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGG 147479 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 || || ||||| | |||| ||| | || || || || | |||||||||||| Sbjct 147478 GCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAG 147419 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 114870 || |||||||| ||||| ||| || || || ||| | ||||| | || || || Sbjct 147418 ATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTT 147359 Query 114871 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 114930 |||| || |||||||| | || ||| |||||||| || || || || | || | Sbjct 147358 CTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAA 147299 Query 114931 TGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 | || ||| ||| |||||| || |||| || ||| |||||| || || Sbjct 147298 AGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACG 147239 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC 115047 ||||| |||| |||||| | || |||||| || || ||| ||| | || Sbjct 147238 GAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGC 147179 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || |||| || | |||||| || || ||| ||| ||||| ||||| Sbjct 147178 GCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGT 147119 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | |||| || |||| || || ||||| ||||| | || | ||| ||||||||| Sbjct 147118 CTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGA 147059 Query 115168 CGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 |||| |||| ||| || ||||||||||||||||| || || | ||||| ||| Sbjct 147058 AGACAGCTGTG--CTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGA-- 147003 Query 115226 ATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAA 115283 | | |||| |||||| | ||||||||| | |||| || || || || | Sbjct 147002 AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGA 146943 Query 115284 TACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 115343 | || | | ||| ||||| | ||||| |||||| | || | | || || ||| Sbjct 146942 TGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT 146883 Query 115344 TCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 || ||||||| ||||||||||||||| Sbjct 146882 TCAGGAGGTACGATCTCTCCAAGGTCTTGA 146853 >seq933 Length=137956 Score = 111 bits (122), Expect = 2e-19 Identities = 303/460 (66%), Gaps = 18/460 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||| || |||||||| ||||| || ||| | |||||||||||| Sbjct 11531 GTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCAT 11472 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 125871 ||| || || ||||| || || ||| | |||| || ||| | | Sbjct 11471 AAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACC------AA 11418 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||| || || | |||| |||||||||||| |||| | |||||||| || | || Sbjct 11417 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAG 11358 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || || || || ||| | |||| ||| |||||| | ||||| || | ||| Sbjct 11357 GGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGAT 11298 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 | | | || | | | || | | ||| | | | | ||| || ||| Sbjct 11297 GTCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGC 11241 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| |||||||||||||| |||||||| || || ||||| ||| || || Sbjct 11240 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGG 11181 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| || |||||||| | |||||| || | || | ||| |||||| || || Sbjct 11180 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACC 11121 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||| ||| ||||| |||| | ||||| ||| |||||| Sbjct 11120 CTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAG 11081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341466255000