Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1539 105 7e-18 seq1045 82.4 8e-11 >seq1539 Length=122776 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || ||||| ||||| || | || |||||| |||| Sbjct 50526 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCC 50467 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||||||||| || || || || || Sbjct 50466 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 50407 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | |||||| || || || || | ||| | |||| Sbjct 50406 TGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTC 50347 Query 64412 TTGCCGGT 64419 |||||||| Sbjct 50346 TTGCCGGT 50339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || ||||| ||||| |||||||| || | || ||||| | || Sbjct 50805 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 50746 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || | || ||||| || ||||| || ||||| || || Sbjct 50745 TCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCC 50686 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| || || || || | ||| | |||| Sbjct 50685 TGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 50626 Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433 ||||| || | || || |||| Sbjct 50625 TTGCCAGTAAGGGTCTTGACGA 50604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || || |||| || || || || ||||||||||| || | Sbjct 51049 ACCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGA 50990 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| |||||||| ||||| |||| | ||||||||||||||||| Sbjct 50989 CAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGG 50930 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | || || Sbjct 50929 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGAC 50870 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 50869 CTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || || |||| ||| || || || || ||||||||||| Sbjct 51277 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCT 51218 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || | ||||| || ||| ||||||| |||||||| || || || Sbjct 51217 CAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGG 51158 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| ||| || | || || | || || Sbjct 51157 GATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAAC 51098 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || ||||| |||||||| Sbjct 51097 CTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050 >seq1045 Length=66817 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | || || || || || |||||||| || | Sbjct 49738 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 49797 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||| ||||| | || || |||||||||||||| || Sbjct 49798 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 49857 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 49858 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 49917 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || ||||| || ||||| Sbjct 49918 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 49965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634650965000