Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq501 313 2e-80
>seq501
Length=177797
Score = 313 bits (346), Expect = 2e-80
Identities = 1075/1664 (65%), Gaps = 24/1664 (1%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| || |||||| ||||||||||| ||| | || |||
Sbjct 146834 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGATCGTACCTCCTGAAGCTTGACGGC 146893
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| |||| || || || | ||||| ||||| | || || || ||
Sbjct 146894 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGAC 146953
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | || | | | | || ||| | |||| | || |||
Sbjct 146954 AACGTTGAGCGCGTCATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCC 147013
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || || || |||||||| || ||||| ||||| ||||||| || ||||| |
Sbjct 147014 TCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTC 147073
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | || | ||||| ||| || |||| ||||| ||||||| ||| || | ||
Sbjct 147074 GAC-ATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACCTGCGCAATGAT 147132
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || || || || || || ||| |||||| | | || || | || || ||
Sbjct 147133 CTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTA 147192
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| ||| |||||||||||||||||||| |||| || |||||||| ||||| || ||
Sbjct 147193 CATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAA 147252
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || || ||||| ||||||||||| | | | ||| |||| || |||||||
Sbjct 147253 CACTGCTCGGTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCT 147312
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
|||||| |||||||| || || | || | || ||||| |||||||| ||||| ||
Sbjct 147313 CGAGCCTTGGCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGA 147372
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | ||| | ||||| ||| ||||| ||| | || || || || ||||| |
Sbjct 147373 AGAGGTCCGCGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAG 147432
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|| || || ||| | ||||| |||| | || |||||||| || || || || ||||
Sbjct 147433 AGTAGAAAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGA 147492
Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433
| | || | || || | ||| || | |||||| | |||||||| |
Sbjct 147493 CTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCG 147552
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
||| | | | || ||||| ||| || ||| | || | || ||||| ||
Sbjct 147553 CAAGACTCTTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGG 147612
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
| |||| ||| | | |||||| ||| |||| ||| ||||||| || |||| ||
Sbjct 147613 CAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGG 147672
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || || ||||| ||||| | ||||| | | || |||||| |
Sbjct 147673 TACCATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGT 147732
Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673
|||||||||||||||| ||| | | || |||| ||||| || ||||| |
Sbjct 147733 CGCTGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGT------TGACTACA--AC 147784
Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731
| | || | ||| | || |||| | || | ||| || || |||
Sbjct 147785 GAGGGTGTC-TACGACTTCCAGAAGCTCCACGAGGTCAC--CCAGGTTGTCGTTCGCAAC 147841
Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791
|| ||||| | || || ||| |||||| |||| |||||| ||| ||| ||
Sbjct 147842 CTCAACAGAATCATTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATG 147901
Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851
|| || ||||| || |||| || |||||| | ||||| || | || | ||
Sbjct 147902 CGCCACCGCCCCATTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGC 147961
Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911
|||||| ||| ||| || || | | || ||| |||||||| | || ||
Sbjct 147962 ATGCCCTTCGAGTCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTAC 148021
Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971
| | ||| | | || || || ||||| | ||| | || || || | ||
Sbjct 148022 CATGCTGCCCTTACTATGTCGGTGCAGTTGGCTA---AGGAGGAGGGTCCCTACCAGACG 148078
Query 94972 TTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCC 95031
| | || || || | ||||||||| | |||| |||| | ||| ||| ||||||
Sbjct 148079 TACGAGGGTTCCCCTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCC 148138
Query 95032 TCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAA 95089
|||| ||| | |||||||| ||||| | | || || | | | |||||||| |
Sbjct 148139 TCGGATCTCTGGGACTGGGACGCTCTGAAGGAGCAGA--TCAAGCAGCACGGTGTCCGCA 148196
Query 95090 ACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACG 95149
|| | ||||| || || |||||||| || ||| ||| | |||||| | |||||||| |
Sbjct 148197 ACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATG 148256
Query 95150 AGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209
||| ||||| |||| |||||||||| | ||| | | || || || || || || || |
Sbjct 148257 AGTGCTTCGAGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTC 148316
Query 95210 CCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAG 95268
||| ||||| ||| | |||||| | || | ||||| ||||| ||
Sbjct 148317 AAGTCGTCAACCCTTGGCTCTTGAAGGACCTCGTCGAC-ATGGGTCTGTGGTCCGATGCT 148375
Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAG 95328
| ||||||| | | || ||||| || ||||||||||||| | || ||
Sbjct 148376 ATGAAGAACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAACATTCCTACC 148435
Query 95329 GACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
|| | ||||| | |||||||| || ||||| ||| | |||||
Sbjct 148436 GAGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCG 148479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494713150935000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |