Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq501 313 2e-80 >seq501 Length=177797 Score = 313 bits (346), Expect = 2e-80 Identities = 1075/1664 (65%), Gaps = 24/1664 (1%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| ||||||||||| ||| | || ||| Sbjct 146834 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGATCGTACCTCCTGAAGCTTGACGGC 146893 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| ||||| | || || || || Sbjct 146894 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGAC 146953 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || ||| | |||| | || ||| Sbjct 146954 AACGTTGAGCGCGTCATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCC 147013 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || || || |||||||| || ||||| ||||| ||||||| || ||||| | Sbjct 147014 TCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTC 147073 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | ||||| ||| || |||| ||||| ||||||| ||| || | || Sbjct 147074 GAC-ATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACCTGCGCAATGAT 147132 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| |||||| | | || || | || || || Sbjct 147133 CTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTA 147192 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| |||||||||||||||||||| |||| || |||||||| ||||| || || Sbjct 147193 CATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAA 147252 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || || ||||| ||||||||||| | | | ||| |||| || ||||||| Sbjct 147253 CACTGCTCGGTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCT 147312 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| || || | || | || ||||| |||||||| ||||| || Sbjct 147313 CGAGCCTTGGCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGA 147372 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | ||||| ||| ||||| ||| | || || || || ||||| | Sbjct 147373 AGAGGTCCGCGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAG 147432 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || || || ||| | ||||| |||| | || |||||||| || || || || |||| Sbjct 147433 AGTAGAAAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGA 147492 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | | || | || || | ||| || | |||||| | |||||||| | Sbjct 147493 CTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCG 147552 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| | | | || ||||| ||| || ||| | || | || ||||| || Sbjct 147553 CAAGACTCTTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGG 147612 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | |||| ||| | | |||||| ||| |||| ||| ||||||| || |||| || Sbjct 147613 CAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGG 147672 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| ||||| | ||||| | | || |||||| | Sbjct 147673 TACCATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGT 147732 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 |||||||||||||||| ||| | | || |||| ||||| || ||||| | Sbjct 147733 CGCTGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGT------TGACTACA--AC 147784 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731 | | || | ||| | || |||| | || | ||| || || ||| Sbjct 147785 GAGGGTGTC-TACGACTTCCAGAAGCTCCACGAGGTCAC--CCAGGTTGTCGTTCGCAAC 147841 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 || ||||| | || || ||| |||||| |||| |||||| ||| ||| || Sbjct 147842 CTCAACAGAATCATTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATG 147901 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || || ||||| || |||| || |||||| | ||||| || | || | || Sbjct 147902 CGCCACCGCCCCATTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGC 147961 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 |||||| ||| ||| || || | | || ||| |||||||| | || || Sbjct 147962 ATGCCCTTCGAGTCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTAC 148021 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971 | | ||| | | || || || ||||| | ||| | || || || | || Sbjct 148022 CATGCTGCCCTTACTATGTCGGTGCAGTTGGCTA---AGGAGGAGGGTCCCTACCAGACG 148078 Query 94972 TTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCC 95031 | | || || || | ||||||||| | |||| |||| | ||| ||| |||||| Sbjct 148079 TACGAGGGTTCCCCTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCC 148138 Query 95032 TCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAA 95089 |||| ||| | |||||||| ||||| | | || || | | | |||||||| | Sbjct 148139 TCGGATCTCTGGGACTGGGACGCTCTGAAGGAGCAGA--TCAAGCAGCACGGTGTCCGCA 148196 Query 95090 ACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACG 95149 || | ||||| || || |||||||| || ||| ||| | |||||| | |||||||| | Sbjct 148197 ACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATG 148256 Query 95150 AGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 ||| ||||| |||| |||||||||| | ||| | | || || || || || || || | Sbjct 148257 AGTGCTTCGAGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTC 148316 Query 95210 CCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAG 95268 ||| ||||| ||| | |||||| | || | ||||| ||||| || Sbjct 148317 AAGTCGTCAACCCTTGGCTCTTGAAGGACCTCGTCGAC-ATGGGTCTGTGGTCCGATGCT 148375 Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAG 95328 | ||||||| | | || ||||| || ||||||||||||| | || || Sbjct 148376 ATGAAGAACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAACATTCCTACC 148435 Query 95329 GACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || | ||||| | |||||||| || ||||| ||| | ||||| Sbjct 148436 GAGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCG 148479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713150935000