Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq501 125 7e-24 seq1045 109 5e-19 seq1539 82.4 8e-11 >seq501 Length=177797 Score = 125 bits (138), Expect = 7e-24 Identities = 722/1137 (64%), Gaps = 25/1137 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| |||||||||||||| || | || || | || | ||| ||| | | Sbjct 148328 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 148269 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | || || ||||| | || |||| ||| | || ||||||||| ||| | Sbjct 148268 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 148209 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | || ||| || || | |||||| ||| || | | ||||||| || | ||| ||| Sbjct 148208 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGCGTCCCAGTCC 148150 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || |||| || | | ||||||||||||||||| | | || || | || Sbjct 148149 CAGAGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGG 148090 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG--A 153324 || | |||| |||| || || | |||| | ||| | | | | | | Sbjct 148089 GAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCACCGA-CATAGTAA 148032 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || ||| ||| || || ||| || | || ||||| | ||||| || Sbjct 148031 GGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACT 147972 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | |||||||| || || ||||| || || |||||||| | ||||| || |||| Sbjct 147971 CGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGG 147912 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 | || || | ||||||| | || ||| || | || ||||| ||| ||| || Sbjct 147911 GGCGGTGGCGCATGTTGCTGTTGCGGGC-CTC-CTGGACCGGGTAGTGGTTGACATCAAT 147854 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||| ||||||||||||| || || || | || | | | | || |||| ||| || || Sbjct 147853 GATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 147794 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | ||| || || ||||| || ||||| ||||| || || Sbjct 147793 GACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGC 147734 Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 ||| || |||| || ||||| | |||||| | |||||||||| || ||| Sbjct 147733 GACCTCGTCAGGCG-CGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGG 147675 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||| || | ||| ||||||||||| ||| || || ||| |||||||| | || Sbjct 147674 TACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGT 147615 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| ||| | |||| ||| | ||| || | || || | Sbjct 147614 TGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACC---AGAGCTTTTGGGCCTTAAGAG 147558 Query 153799 GCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 || ||| |||| || | ||||| |||||| | ||| ||||| || ||| Sbjct 147557 TCTTGCGACCCTTGCCCATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCG 147499 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917 ||||||||||| || || || |||| || || ||||| || | ||| ||| Sbjct 147498 TAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTT 147439 Query 153918 TTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG 153977 | || | |||||| ||||| || | ||| || || | ||||| || || | Sbjct 147438 TCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGG 147379 Query 153978 CAATCCTCCGCGCCCATGTTGCGT-TTCAGATTGAGCACGCTATAGATGTCGGCGTGCCA 154036 || ||| | ||||| | | | ||||| | | | ||| ||||||||||| Sbjct 147378 ACCTCTTCCTTG-CCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCA 147320 Query 154037 GGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCG 154093 || || | |||| ||| | ||||| |||| || || ||||| ||||||| || Sbjct 147319 AGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCG 147260 Query 154094 CACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | || || ||||| || | |||||| | | ||| | | |||||| ||||| Sbjct 147259 AGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGT 147203 >seq1045 Length=66817 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || |||||||||||| | Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| ||||||||| Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 49917 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||| || || || || || || ||||||||| Sbjct 49918 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966 >seq1539 Length=122776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| |||||||||||||| || ||| || || || || || || |||| Sbjct 51017 TTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGG 50958 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | |||||| ||||| ||||| || || || ||||| ||| | || | || Sbjct 50957 CGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTC 50899 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | || || ||||| | ||| | || || ||||||| || Sbjct 50898 ACGTTG-TCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840 Query 138597 TTTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 50839 CTTGACGAAGATCTGCAT 50822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252319670000