Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq501 125 7e-24
seq1045 109 5e-19
seq1539 82.4 8e-11
>seq501
Length=177797
Score = 125 bits (138), Expect = 7e-24
Identities = 722/1137 (64%), Gaps = 25/1137 (2%)
Strand=Plus/Minus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| |||||||||||||| || | || || | || | ||| ||| | |
Sbjct 148328 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 148269
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | || || ||||| | || |||| ||| | || ||||||||| ||| |
Sbjct 148268 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 148209
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206
| | || ||| || || | |||||| ||| || | | ||||||| || | ||| |||
Sbjct 148208 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGCGTCCCAGTCC 148150
Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266
|| || |||| || | | ||||||||||||||||| | | || || | ||
Sbjct 148149 CAGAGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGG 148090
Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG--A 153324
|| | |||| |||| || || | |||| | ||| | | | | | |
Sbjct 148089 GAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCACCGA-CATAGTAA 148032
Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384
| || ||| ||| || || ||| || | || ||||| | ||||| ||
Sbjct 148031 GGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACT 147972
Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
|| | |||||||| || || ||||| || || |||||||| | ||||| || ||||
Sbjct 147971 CGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGG 147912
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502
| || || | ||||||| | || ||| || | || ||||| ||| ||| ||
Sbjct 147911 GGCGGTGGCGCATGTTGCTGTTGCGGGC-CTC-CTGGACCGGGTAGTGGTTGACATCAAT 147854
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
||| ||||||||||||| || || || | || | | | | || |||| ||| || ||
Sbjct 147853 GATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 147794
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
| |||| | | ||| || || ||||| || ||||| ||||| || ||
Sbjct 147793 GACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGC 147734
Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
||| || |||| || ||||| | |||||| | |||||||||| || |||
Sbjct 147733 GACCTCGTCAGGCG-CGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGG 147675
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
|||| || | ||| ||||||||||| ||| || || ||| |||||||| | ||
Sbjct 147674 TACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGT 147615
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798
||| |||||| ||| | |||| ||| | ||| || | || || |
Sbjct 147614 TGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACC---AGAGCTTTTGGGCCTTAAGAG 147558
Query 153799 GCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857
|| ||| |||| || | ||||| |||||| | ||| ||||| || |||
Sbjct 147557 TCTTGCGACCCTTGCCCATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCG 147499
Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917
||||||||||| || || || |||| || || ||||| || | ||| |||
Sbjct 147498 TAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTT 147439
Query 153918 TTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG 153977
| || | |||||| ||||| || | ||| || || | ||||| || || |
Sbjct 147438 TCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGG 147379
Query 153978 CAATCCTCCGCGCCCATGTTGCGT-TTCAGATTGAGCACGCTATAGATGTCGGCGTGCCA 154036
|| ||| | ||||| | | | ||||| | | | ||| |||||||||||
Sbjct 147378 ACCTCTTCCTTG-CCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCA 147320
Query 154037 GGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCG 154093
|| || | |||| ||| | ||||| |||| || || ||||| ||||||| ||
Sbjct 147319 AGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCG 147260
Query 154094 CACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
| | || || ||||| || | |||||| | | ||| | | |||||| |||||
Sbjct 147259 AGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGT 147203
>seq1045
Length=66817
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || | || | | |||||||| || |||||||||||| |
Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || |||| |||| || ||||| ||||| || ||
Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| |||||||||
Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 49917
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || ||||| || || || || || || |||||||||
Sbjct 49918 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966
>seq1539
Length=122776
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| |||||||||||||| || ||| || || || || || || ||||
Sbjct 51017 TTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGG 50958
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| || | |||||| ||||| ||||| || || || ||||| ||| | || | ||
Sbjct 50957 CGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTC 50899
Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| ||| || | ||||| | || || ||||| | ||| | || || ||||||| ||
Sbjct 50898 ACGTTG-TCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840
Query 138597 TTTTACAAAAATCTGCAT 138614
|| || || ||||||||
Sbjct 50839 CTTGACGAAGATCTGCAT 50822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496252319670000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |