Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq501 122 8e-23 seq1045 114 1e-20 seq1539 107 2e-18 seq1103 86.0 6e-12 >seq501 Length=177797 Score = 122 bits (134), Expect = 8e-23 Identities = 356/538 (66%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| |||||| |||| | ||| | ||||||| || ||||||||||| || || || Sbjct 148357 CATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGAC 148298 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 || | | || | |||| |||| | |||||||| |||| ||||| || | ||||| Sbjct 148297 ACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTG 148238 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 | || | || || |||||| ||| || |||| |||||| | || ||||| | || Sbjct 148237 AGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTT 148178 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | |||| ||| || | ||| | ||| | |||||| ||| | | ||| | Sbjct 148177 G-ATCTGCTCCTTCAGAGCGTCCCAGTCCCAGA---GATCCGAGGGCTTAACATTCCACA 148122 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330 ||||||| || | | |||| | | |||||||| | |||||||| | || ||||| Sbjct 148121 TGTCGTACTGGAGAATGCCCTGAGAAACAGGGG--AACCCTCGTACGTCTGGTAGGGACC 148064 Query 146331 GTCGATCTTGGCCAGTTCGCAGCTAGCT-TCCAGAGCCGAAAAGTATATGGTCTCCGCGA 146389 || ||| |||| | ||| | | | || || | | ||| || ||||| | Sbjct 148063 CTCCTCCTTAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATA 148005 Query 146390 TCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGG 146449 || | | ||||| | | || || ||| |||| || |||| || |||| Sbjct 148004 TCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGG 147945 Query 146450 CGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCA 146508 | || || |||||||| | |||| ||||| ||||||||| | |||| ||||| || Sbjct 147944 CATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGG 147885 Query 146509 GCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAA 146566 | || | | ||| ||||||||| || ||||| ||||||| || || ||||||| Sbjct 147884 CCTCCTGGACCGGG-TAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAA 147828 >seq1045 Length=66817 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 49918 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 49919 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966 >seq1539 Length=122776 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || || |||||| ||| || ||||| ||||| Sbjct 51018 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 50959 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| |||||||| |||||||| ||||||||||||||| || || ||| Sbjct 50958 GCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 50899 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| ||||| || | || | || || || |||| || Sbjct 50898 ACGTTG-TCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 50839 CTTGACGAAGATCTGCAT 50822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || ||||||||||| ||| Sbjct 50541 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 50482 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||| | |||||||| |||||||| Sbjct 50481 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 50422 Query 127007 ATGCCCTCCTTGTCC 127021 || |||||||||||| Sbjct 50421 ATACCCTCCTTGTCC 50407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || |||||||||| || |||||| || || | || ||||| Sbjct 51247 CGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCC 51188 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | || | ||||||||||| || || |||||||||||||| ||| ||| ||| Sbjct 51187 AGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 51128 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||||||| | ||| || || | || | || || || |||| || Sbjct 51127 AACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGT 51068 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 51067 CTTGACGAAGATTTGCAT 51050 >seq1103 Length=171845 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 93387 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 93328 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 93327 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 93268 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 93267 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 93208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491141390000