Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq501 212 8e-50 seq933 111 2e-19 >seq501 Length=177797 Score = 212 bits (234), Expect = 8e-50 Identities = 1159/1834 (63%), Gaps = 47/1834 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 148664 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 148605 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 148604 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 148545 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | || || || ||||||||| || || || || ||||| | | Sbjct 148544 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 148488 Query 115706 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762 || | | || | |||||||| ||||| |||| | ||| | || || | Sbjct 148487 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 148428 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCCT 115819 | | ||| || |||||||| ||| || | | |||| | | ||||||| | | Sbjct 148427 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 148371 Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 ||||| ||||| || | ||| |||| || ||| ||||| || ||||| Sbjct 148370 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACT 148311 Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 | || || ||| || | | || ||||||| ||||| ||||| ||||||||||||| Sbjct 148310 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 148251 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 | |||||||| || | ||| ||| || |||||||| || | ||| || |||||||| Sbjct 148250 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 148191 Query 116000 GACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 116059 ||| | | | || | ||||| || ||||||||||| || | | || Sbjct 148190 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 148131 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | | |||||| || ||||||| || || || || | || || ||||| | |||| | Sbjct 148130 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 148071 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 116177 | || ||||| ||| ||||| | | | | | | ||||| || || || ||||| Sbjct 148070 AGGGACCCTCCTCCTTAGCCAA--CTGCACCGACATAGTAAGGGCAGCATGGTAGATTGT 148013 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA 116237 ||| || || || | | || || || || || | | ||| Sbjct 148012 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 147953 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 147952 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 147893 Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 || || || || || || || || ||| || | || || || || Sbjct 147892 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 147833 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-- 116415 |||||||| |||| || || ||||| | | | || | | | ||| | | | Sbjct 147832 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 147776 Query 116416 -ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 || | | || | ||| | || ||||| |||||||||| | ||| || | | Sbjct 147775 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 147716 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| || || || || || | || || || ||||| |||| |||||| || | Sbjct 147715 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTG-GT 147657 Query 116535 TGACTTTG-TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 || |||| ||| ||||||||||||||||| | || | || ||||| ||||| | Sbjct 147656 TGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 147597 Query 116594 ACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 116651 || ||| || || | ||| | | ||| | || | ||| || |||| | Sbjct 147596 CCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG-ACCCTTGCCCAT- 147539 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710 || |||||||| ||| | |||||| ||||| ||| || ||| || | || || | Sbjct 147538 CTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCA-CCGTAGCAGTCGGCAAGACCAG 147480 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | || || || || | |||| ||| | || || || || | ||||||||||| Sbjct 147479 GGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGA 147420 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 | || |||||||| || || ||| || || || ||| | ||||| | || || | Sbjct 147419 GATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGT 147360 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | |||| || |||||||| | || ||| |||||||| || || || || | || | Sbjct 147359 TCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAA 147300 Query 116891 TTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | || | |||| ||| |||||| || |||| || || ||||| | Sbjct 147299 AAGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 147243 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 | || ||||| |||| |||||| | || |||||| || || ||| ||| | Sbjct 147242 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 147183 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 | || | || ||||| || | |||||| || || ||| ||| ||||| ||||| Sbjct 147182 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 147123 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | |||| || |||| || || ||||| ||||| | || | ||| ||||||| Sbjct 147122 AGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGC 147063 Query 117125 AGCTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 | |||| |||| ||| || ||||||||||||||||| || || | ||||| | Sbjct 147062 AAGAAGACAGCTGTG--CTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 147005 Query 117183 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 || | | |||| |||||| | ||||||||| | ||| || || || || Sbjct 147004 GA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCC 146947 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300 || || | | ||| ||||| | ||||| |||||| | || | | || || Sbjct 146946 CAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 146887 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 ||| || ||||||| ||||||||||||||| Sbjct 146886 AGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 146853 >seq933 Length=137956 Score = 111 bits (122), Expect = 2e-19 Identities = 332/507 (65%), Gaps = 24/507 (5%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||| || |||||||| ||||| ||| | ||| |||||||||||| Sbjct 11531 GTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCAT 11472 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 127344 ||| || || ||||| || || ||| | |||| || ||| | | Sbjct 11471 AAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACC------AA 11418 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||| || || | |||| |||||||||||| |||| | |||||||| || | || Sbjct 11417 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAG 11358 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || || || || ||| | |||| ||| |||||| | || || || | ||| Sbjct 11357 GGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGAT 11298 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 | | | ||| | | | || | | ||| | | | | ||| || || Sbjct 11297 GTCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CAG-GC 11241 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| |||||||||||||| |||||||| || || ||||| |||||| || Sbjct 11240 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGG 11181 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || |||||||| | |||||| || | || | ||| |||||| || || Sbjct 11180 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACC 11121 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAA 127698 ||| ||| ||||| |||| | ||||| || ||||| |||||| ||| || Sbjct 11120 CTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAAT 11064 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725 |||||| | ||||| | ||||| || Sbjct 11063 CCACTTGAGGGCCCAGTCGGCCTTCTT 11037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494738135000