Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 170 5e-37
seq1045 136 9e-27
seq1103 91.5 3e-13
>seq1539
Length=122776
Score = 170 bits (188), Expect = 5e-37
Identities = 163/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||| ||||| |||||||| || | ||||||||||| |||||| | ||||||
Sbjct 51033 AGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCT 50974
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||||||||||||||| || | |||||||||||| ||| ||| || || |||
Sbjct 50973 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 50914
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| ||||| | || ||| || |||| |||||| |||
Sbjct 50913 TGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTC 50854
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 50853 TTTCCAGTCAATGTCTTGACGAAGATCTG 50825
Score = 95.1 bits (104), Expect = 3e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| || | |||||||| | | || | || ||
Sbjct 50526 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCC 50467
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| |||||||||||||| ||| || || || |||
Sbjct 50466 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 50407
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| || || | | || || |||| ||||| |||
Sbjct 50406 TGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTC 50347
Query 199598 TTACCCGTGA 199607
|| || ||||
Sbjct 50346 TTGCCGGTGA 50337
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|| ||||||||||||||| |||||||||| | |||||| | || |||||| | |||||
Sbjct 50951 ATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAACATTCAGAAG 51010
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| ||||||||||||||
Sbjct 51011 GAGTCAACTCTTCACCTTGT 51030
Score = 86.0 bits (94), Expect = 1e-11
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || || |||||||||| ||||||||| | | ||| | |||||
Sbjct 50805 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 50746
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| | || ||||| || ||| || ||||| |||
Sbjct 50745 TCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCC 50686
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 50685 TGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 50626
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || || || || || ||
Sbjct 50625 TTGCCAGTAAGGGTCTTGAC 50606
Score = 84.2 bits (92), Expect = 5e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || |||||||| |||| |||||| || || || | || ||
Sbjct 51261 AGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 51202
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||||| || || |||||||||||||| || || || || || ||
Sbjct 51201 TCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCT 51142
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || || | ||||| | | || || |||||||| || |||
Sbjct 51141 TGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTC 51082
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || |||||
Sbjct 51081 TTTCCAGTCAACGTCTTGACGAAGATTTG 51053
>seq1045
Length=66817
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||||||||| |||||||| |||| ||||||||| | || ||
Sbjct 49745 CGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 49804
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||||||||||||||| || ||||||||||| || || ||
Sbjct 49805 CGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCC 49864
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 49865 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGG 49924
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||||||||| || ||||| || || ||
Sbjct 49925 GTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTG 49962
>seq1103
Length=171845
Score = 91.5 bits (100), Expect = 3e-13
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 199432 AGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489
|||| ||| |||| |||| ||||||||| | | || | ||||| || ||||||||
Sbjct 93399 AGTCCACTGACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTG 93340
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
||||||||||| | ||||||||||| || || || || ||||| ||||| |
Sbjct 93339 CCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGAC 93280
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|| || |||| ||||||| | || || || | || || ||||||||||| ||
Sbjct 93279 TTGACATTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGG 93220
Query 199610 GTTTTCACAAAA 199621
|| ||||| |||
Sbjct 93219 GTCTTCACGAAA 93208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178897054483875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |