Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq933 145 8e-30
seq1045 131 2e-25
seq1539 102 8e-17
seq1103 96.9 3e-15
>seq933
Length=137956
Score = 145 bits (160), Expect = 8e-30
Identities = 198/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| ||| || | || ||||| | ||||||||| || || ||
Sbjct 10914 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAA 10855
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || ||||| ||| || || || ||| |||||||||| ||
Sbjct 10854 GCCGTAGAAGCAGCGGGCCTCAGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 10795
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||||||||||||| |||||||| ||||| || | |||| |||||| |
Sbjct 10794 CTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 10735
Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || | || | | ||||||| || |||||| ||||| || | ||||||
Sbjct 10734 CTCATCCTCATTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAGATCAATCTCCTC 10675
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || |||||||| || ||||||||
Sbjct 10674 TGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 10639
Score = 114 bits (126), Expect = 1e-20
Identities = 342/519 (66%), Gaps = 18/519 (3%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| ||||| ||||| || ||| | || || ||||| || || || || || |
Sbjct 11549 CATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACC 11490
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710
|| ||| || | |||||| || |||||||||| | ||||| |||| | |
Sbjct 11489 CAGGGAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCC 11430
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768
|| | || | || | |||||| |||||||| ||||| ||| ||| |||| | |
Sbjct 11429 AAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT--GGAG 11372
Query 132769 TTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827
|| | || ||||| |||| || || || || || || || ||||| || |||
Sbjct 11371 TTCATGCCAAGCAGGGCGCAA-GGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGAC 11313
Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884
|| ||| | ||| ||| |||| || ||| || || | | | ||
Sbjct 11312 GGCATCGACAATGATGTCCTCGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTGGGA 11256
Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944
| ||| | ||| || |||||| |||| |||||||| | || ||||| ||||||
Sbjct 11255 GTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 11196
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||| |||| ||||||||||||||||| || |||||||| || |||| |||||| ||
Sbjct 11195 GAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 11136
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTT 133063
||||| | |||||||| || ||||| || |||| |||| |||| | || |||
Sbjct 11135 ACTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTT 11076
Query 133064 CT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|| | ||| ||||| || ||||| ||||||||
Sbjct 11075 CTCATCGCT---AATCCACTTGAGGGCCCAGTCGGCCTT 11040
>seq1045
Length=66817
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || || ||||||||||| || | || ||
Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGG 49739
>seq1539
Length=122776
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||| | || || || || || || | || || ||| | |
Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | |||| || |||| ||||| ||||| || ||| | || ||
Sbjct 51110 GACACGATTGACAATG-TTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCA 51168
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| || || || || |||| |||| |||||||| | ||| |||||
Sbjct 51169 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 51228
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | ||||| || | || || ||| || | |||||
Sbjct 51229 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 51276
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|||| | |||| || || || || ||||| |||||||| |||| || ||| || | ||
Sbjct 50597 CAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAT 50656
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | | | | | || || || | ||||| || || || || | || || ||
Sbjct 50657 ACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAA 50716
Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426
|| | || | || ||||| ||||| || || | ||||| ||| ||||||||||||
Sbjct 50717 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATC 50776
Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||| | || || || |||||||| |||
Sbjct 50777 CAAAAGGAATCCACCCTTCACTTGGTGCTCCGT 50809
>seq1103
Length=171845
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 93209 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 93268
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| |
Sbjct 93269 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 93328
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 93329 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 93388
Query 38433 G 38433
|
Sbjct 93389 G 93389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162640240000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |