Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq933 145 8e-30 seq1045 131 2e-25 seq1539 102 8e-17 seq1103 96.9 3e-15 >seq933 Length=137956 Score = 145 bits (160), Expect = 8e-30 Identities = 198/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| || || || Sbjct 10914 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAA 10855 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| ||| || || || ||| |||||||||| || Sbjct 10854 GCCGTAGAAGCAGCGGGCCTCAGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 10795 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||||||||||||| |||||||| ||||| || | |||| |||||| | Sbjct 10794 CTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 10735 Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || | || | | ||||||| || |||||| ||||| || | |||||| Sbjct 10734 CTCATCCTCATTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAGATCAATCTCCTC 10675 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 10674 TGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 10639 Score = 114 bits (126), Expect = 1e-20 Identities = 342/519 (66%), Gaps = 18/519 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| ||||| || ||| | || || ||||| || || || || || | Sbjct 11549 CATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACC 11490 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || ||| || | |||||| || |||||||||| | ||||| |||| | | Sbjct 11489 CAGGGAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCC 11430 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768 || | || | || | |||||| |||||||| ||||| ||| ||| |||| | | Sbjct 11429 AAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT--GGAG 11372 Query 132769 TTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || ||||| |||| || || || || || || || ||||| || ||| Sbjct 11371 TTCATGCCAAGCAGGGCGCAA-GGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGAC 11313 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || ||| | ||| ||| |||| || ||| || || | | | || Sbjct 11312 GGCATCGACAATGATGTCCTCGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTGGGA 11256 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| | ||| || |||||| |||| |||||||| | || ||||| |||||| Sbjct 11255 GTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 11196 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| ||||||||||||||||| || |||||||| || |||| |||||| || Sbjct 11195 GAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 11136 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTT 133063 ||||| | |||||||| || ||||| || |||| |||| |||| | || ||| Sbjct 11135 ACTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTT 11076 Query 133064 CT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | ||| ||||| || ||||| |||||||| Sbjct 11075 CTCATCGCT---AATCCACTTGAGGGCCCAGTCGGCCTT 11040 >seq1045 Length=66817 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||||||||| || | || || Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGG 49739 >seq1539 Length=122776 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || || || || || || | || || ||| | | Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | |||| || |||| ||||| ||||| || ||| | || || Sbjct 51110 GACACGATTGACAATG-TTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCA 51168 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| || || || || |||| |||| |||||||| | ||| ||||| Sbjct 51169 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 51228 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| || | || || ||| || | ||||| Sbjct 51229 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 51276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 |||| | |||| || || || || ||||| |||||||| |||| || ||| || | || Sbjct 50597 CAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAT 50656 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | | || || || | ||||| || || || || | || || || Sbjct 50657 ACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAA 50716 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || | || | || ||||| ||||| || || | ||||| ||| |||||||||||| Sbjct 50717 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATC 50776 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| | || || || |||||||| ||| Sbjct 50777 CAAAAGGAATCCACCCTTCACTTGGTGCTCCGT 50809 >seq1103 Length=171845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 93209 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 93268 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 93269 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 93328 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 93329 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 93388 Query 38433 G 38433 | Sbjct 93389 G 93389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162640240000