Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1347 338 8e-88 seq1472 140 4e-28 seq328 105 8e-18 >seq1347 Length=243407 Score = 338 bits (374), Expect = 8e-88 Identities = 689/1021 (67%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 218483 ATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 218542 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || || ||||| || || || Sbjct 218543 GGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGATGCGGGGGATACGGGTGGAA 218602 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||||||| | ||| || Sbjct 218603 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGATCTTGGCGTCGGTGAGGACG 218662 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || |||||||| || ||| Sbjct 218663 CGGTCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCAAAGCGGGCA 218722 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| |||| ||| ||||| | ||| || || || || | || Sbjct 218723 CGGGTGATGGAGGTGTAGAAGTCAATGCCCTCGTAGAGCGAGTCGATCTCGATAGAGGTC 218782 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | ||| || || Sbjct 218783 TGGGCAGACGAGGAAAGAGTGCGCTTGGCACGCTCGCAAGCGGTACGGAGACGGCGCAGA 218842 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||| | ||| ||||| || || || || ||||| | |||||| Sbjct 218843 GCGCGGGCGTTGGTGGATAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 218902 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 || ||| | ||||| || |||||||||||||| || || || ||||| | || Sbjct 218903 TTAACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGACTTA 218962 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || ||||| || | |||||| | | | || ||||| || ||||||||||| || Sbjct 218963 ACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAAGTACCACCACCAAGA 219022 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| || | || ||||| || |||||||| ||||| || Sbjct 219023 TCGAAGATGAGAACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCGTAGGCGATGGCA 219082 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 ||||| || || || || || || || || ||| || || |||||| | || || Sbjct 219083 GCCGCGGTGGGCTCGTTGATGATGCGCAGGACGTTGAGACCGGCAATAAGACCAGCGTCC 219142 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || ||||| || || || || ||||| |||||||| ||||| || | ||| |||| || Sbjct 219143 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGACAGTGATGACAGCGTTGTTG 219202 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || | ||| || |||| || ||| | || ||| ||||| |||||||| | || Sbjct 219203 ACCTGGCCACCCAGGAACGACTCAGCGGTCTCACGCATCTTGGTGAGAACCATGGCAGAG 219262 Query 7802 ATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA 7861 ||||| |||| | || || || || || || || ||||| | ||| || || Sbjct 219263 ATCTCCTCAGGGGTGAAGGTCTTGGTCTCGCCCTTGAACTCAACCTGAATGGCAGGCTT- 219321 Query 7862 TCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920 || | | | ||| ||||| ||| | | ||||||||| | || |||| | Sbjct 219322 ---GCCGTTCTTGTCGATGACCTTGAACGGGAAGTGCTTCATATCGGCCTGCACCTCGTT 219378 Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 |||| ||||| | ||||| |||||||| || || || || ||||| | |||||||| Sbjct 219379 GTCCTGGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACGGTGTTGTGCGGGTTCAT 219438 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 || |||||||| || || || ||||| | ||| || | || || |||||||| Sbjct 219439 CGCGACCTGGTTCTTGGCGGCATCTCCGATCAAACGCTC---TGTGTCGGTGAACGCGAC 219495 Query 8041 G 8041 | Sbjct 219496 G 219496 >seq1472 Length=46454 Score = 140 bits (154), Expect = 4e-28 Identities = 344/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAA--TGGATG-TATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| | ||| || | ||| ||| || ||| | | || Sbjct 37599 TCCTCGAAACGAGCACGGGTGAGCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 37543 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| |||||||| || | Sbjct 37542 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCGCGCTCGCAAG 37485 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| || || | || ||||| || || | Sbjct 37484 CAGTGCGAAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 37425 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| || || | | ||||| || | ||||||||||| | Sbjct 37424 GGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGGCCACCCAAGTGGG 37365 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 37364 TGTCACCGGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 37305 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | || || ||||| || | | | ||| Sbjct 37304 CGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 37245 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 37244 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 37185 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| |||| | ||||| || || || || || || ||||| |||||||| | Sbjct 37184 GGCCAGCGATAGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 37125 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | || || | | || ||||| |||| Sbjct 37124 GGACGGTGATAACGGCCTTCTCAACCTTCTTGCCGA 37089 >seq328 Length=164283 Score = 105 bits (116), Expect = 8e-18 Identities = 222/329 (67%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 116351 ATCGAAGTCCTCGCCACCAAGGTGGGTGTCGCCGTTGGTGGACTTGACCTCGAAGACACC 116410 Query 7516 TCCTTCAATGTTTAACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | || | || |||| | | ||| || ||||||||||| || ||| | | | | Sbjct 116411 GTTCTGGATCTC-AAGAACGGAGATATCGAAGGTACCACCACCAAGATCATAGACGGCGA 116469 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || || ||||| | ||| || | |||||| || | ||| || || || || | Sbjct 116470 CGA------CGCGGTCTTCCTCCTTCTCCAAACCGTAGGCCAGAGCGGCGGCAGTGGGCT 116523 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | | ||| ||| ||||||||||||||| | ||||| || || || || | Sbjct 116524 CGTTGACGACACGCAGAACGTTCAGGCCAGCAATCTGACCGGCATCCTTGGTAGCCTGAC 116583 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || |||||||||||||| || || || ||||| |||| | |||| ||| || Sbjct 116584 GCTGGGAGTCGTTAAAGTAGGCAGGAACAGTGACGACAGCGTTCTTGACGGGCTTCGAGA 116643 Query 7755 GATACGATTCCGCGATATCTTTCATTTTG 7783 | || | || ||| | || ||||| ||| Sbjct 116644 GGTAAGCCTCGGCGGTCTCCTTCATCTTG 116672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119898865000