Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq501 279 6e-70 seq933 138 1e-27 >seq501 Length=177797 Score = 279 bits (308), Expect = 6e-70 Identities = 961/1489 (65%), Gaps = 35/1489 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | || ||| || || | |||| || Sbjct 146909 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 146968 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACACTCTTC 147028 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | | || |||| ||| |||||| | | | || ||||| Sbjct 147029 AACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGAC 147088 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || ||| | || ||||||| ||| |||| | ||| ||| ||||| ||| ||||| Sbjct 147089 TCTATCGAGGGTATTTACGACACCCTCAAG--ACCTGCGCAATGATCTCCAAGATGGCTG 147146 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 |||| || || | || |||| || | || | | ||| ||| || || | Sbjct 147147 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 147206 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 |||| || | ||||| |||| ||||| || || ||||| ||| || || || | Sbjct 147207 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 147266 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| | || || | || ||||||| ||||| |||| Sbjct 147267 TCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTGGC 147323 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | || || | || |||| ||||| || | || |||| || Sbjct 147324 ACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCG 147383 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || || ||| ||||| ||||| || |||||||||||||||||||| || ||| Sbjct 147384 CCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGA 147443 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || | ||| |||| | || || | || || ||||| |||| | |||| Sbjct 147444 ACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTG 147503 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGA------GGAAGAAAGTCGGGCGACTGCGA 112257 ||||||| || ||| | ||| |||||||| || | |||| |||| | Sbjct 147504 AGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCTTA 147563 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || ||| || | ||| | || || ||| || ||||||||||||| || | | Sbjct 147564 AGG-CCCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACC 147617 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| || || |||| || || || || ||||| ||||| | Sbjct 147618 CCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCA 147677 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || ||||||||||| || || ||| | || | | | || ||| |||| Sbjct 147678 TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGCTG 147737 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496 |||||||||| || || | || | |||| | || || | || || | | | Sbjct 147738 TGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-TAC 147796 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || |||||||| || || | |||| ||||| |||||| | ||| Sbjct 147797 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 147856 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 ||| || ||||| || || || || || || ||| | ||||| || ||| Sbjct 147857 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 147916 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTC 112675 ||||||||||| || ||||| ||||||| ||| || | || || | | || || || Sbjct 147917 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAGTC 147975 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||||| || |||| | ||||| |||||||| || || || || ||| Sbjct 147976 TCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT-- 148033 Query 112736 GGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 | | |||| ||||||| ||| || ||||| || | || | |||||||| || Sbjct 148034 -ACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 148092 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852 | ||| || || | || || | || |||||| | | | || || | || || || Sbjct 148093 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 148152 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 |||||||||||| ||||| | |||||| || | ||| | || ||| ||| | | || Sbjct 148153 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 148212 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| |||| | || |||||||| || ||||| ||||| || ||||| Sbjct 148213 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 148272 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 ||| | ||||| || | | | ||| || || |||||| | |||||| Sbjct 148273 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTTG 148332 Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 ||| || | |||||| || || ||||| |||||| | | ||||||| Sbjct 148333 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAG 148381 >seq933 Length=137956 Score = 138 bits (152), Expect = 1e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164 |||||||| || |||| ||||| || || ||||| | |||||| || ||| ||| Sbjct 11019 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 11078 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || ||||| ||| |||| | | || || || ||| |||||||| |||||| | Sbjct 11079 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 11135 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| ||||| | | || | |||||||||||||| || |||||||| ||||| ||| Sbjct 11136 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 11195 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||||| ||||||||||||||||| || ||| Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 11231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729791170000