Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq501 279 6e-70
seq933 138 1e-27
>seq501
Length=177797
Score = 279 bits (308), Expect = 6e-70
Identities = 961/1489 (65%), Gaps = 35/1489 (2%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | || ||| || || | |||| ||
Sbjct 146909 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 146968
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || |||||| | | |||| ||||| | || || ||||||
Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACACTCTTC 147028
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||||||||| || | | || |||| ||| |||||| | | | || |||||
Sbjct 147029 AACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGAC 147088
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849
|| ||| | || ||||||| ||| |||| | ||| ||| ||||| ||| |||||
Sbjct 147089 TCTATCGAGGGTATTTACGACACCCTCAAG--ACCTGCGCAATGATCTCCAAGATGGCTG 147146
Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909
|||| || || | || |||| || | || | | ||| ||| || || |
Sbjct 147147 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 147206
Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969
|||| || | ||||| |||| ||||| || || ||||| ||| || || || |
Sbjct 147207 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 147266
Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023
| |||| | ||| ||||| | || || | || ||||||| ||||| ||||
Sbjct 147267 TCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTGGC 147323
Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083
|||| ||| || | || || | || |||| ||||| || | || |||| ||
Sbjct 147324 ACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCG 147383
Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143
||| || || ||| ||||| ||||| || |||||||||||||||||||| || |||
Sbjct 147384 CCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGA 147443
Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203
|| | ||| |||| | || || | || || ||||| |||| | ||||
Sbjct 147444 ACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTG 147503
Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGA------GGAAGAAAGTCGGGCGACTGCGA 112257
||||||| || ||| | ||| |||||||| || | |||| |||| |
Sbjct 147504 AGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCTTA 147563
Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
|| ||| || | ||| | || || ||| || ||||||||||||| || | |
Sbjct 147564 AGG-CCCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACC 147617
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||| ||||| || || |||| || || || || ||||| ||||| |
Sbjct 147618 CCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCA 147677
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
|| || ||||||||||| || || ||| | || | | | || ||| ||||
Sbjct 147678 TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGCTG 147737
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496
|||||||||| || || | || | |||| | || || | || || | | |
Sbjct 147738 TGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-TAC 147796
Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556
|| | | || |||||||| || || | |||| ||||| |||||| | |||
Sbjct 147797 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 147856
Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616
||| || ||||| || || || || || || ||| | ||||| || |||
Sbjct 147857 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 147916
Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTC 112675
||||||||||| || ||||| ||||||| ||| || | || || | | || || ||
Sbjct 147917 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAGTC 147975
Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735
||||| || |||| | ||||| |||||||| || || || || |||
Sbjct 147976 TCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT-- 148033
Query 112736 GGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792
| | |||| ||||||| ||| || ||||| || | || | |||||||| ||
Sbjct 148034 -ACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 148092
Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852
| ||| || || | || || | || |||||| | | | || || | || || ||
Sbjct 148093 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 148152
Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912
|||||||||||| ||||| | |||||| || | ||| | || ||| ||| | | ||
Sbjct 148153 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 148212
Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972
|| ||||| || ||| |||| | || |||||||| || ||||| ||||| || |||||
Sbjct 148213 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 148272
Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032
||| | ||||| || | | | ||| || || |||||| | ||||||
Sbjct 148273 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTTG 148332
Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
||| || | |||||| || || ||||| |||||| | | |||||||
Sbjct 148333 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAG 148381
>seq933
Length=137956
Score = 138 bits (152), Expect = 1e-27
Identities = 161/216 (75%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164
|||||||| || |||| ||||| || || ||||| | |||||| || ||| |||
Sbjct 11019 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 11078
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| ||||| ||| |||| | | || || || ||| |||||||| |||||| |
Sbjct 11079 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 11135
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
||| ||||| | | || | |||||||||||||| || |||||||| ||||| |||
Sbjct 11136 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 11195
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||||||||| ||||||||||||||||| || |||
Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 11231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620729791170000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |