Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq501 255 7e-63
seq1264 93.3 5e-14
>seq501
Length=177797
Score = 255 bits (282), Expect = 7e-63
Identities = 1026/1596 (64%), Gaps = 61/1596 (4%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563
||||| ||||| |||||||| |||||| || || ||||| | | | | ||| ||
Sbjct 148533 GACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCT-- 148476
Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623
|| |||||||| |||||||||||||| ||| | || ||||||| ||||
Sbjct 148475 -GGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATG 148417
Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGA 109680
|| || ||||| ||| || | |||| | | |||||| | | ||||| |||
Sbjct 148416 TTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGA 148360
Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAA 109738
|| | | ||| || | ||||| | | ||||| || ||| || |||||||
Sbjct 148359 CCCATGTCGACGAGGTCCTT--CAAGAGCCAAGGGTTGACGACTTGAAACTCGCCAGCAA 148302
Query 109739 GTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGA 109798
| || || |||| ||||| | |||||||| ||||| |||||||||||||| | ||
Sbjct 148301 GGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGA 148242
Query 109799 TTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCG 109858
| || | ||| || || |||||||| || | ||| ||| ||| |||| ||| | |
Sbjct 148241 TCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCT 148182
Query 109859 TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT 109918
||| | | |||| || |||||||| || | || | | | | || | |||
Sbjct 148181 GCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATC-CGA-----GGGCTTAACAT 148128
Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978
|||||| || || || | |||| || | |||| ||||||| | | ||| ||| |
Sbjct 148127 TCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 148068
Query 109979 ACCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035
||||| ||| ||||||| | || || || || ||||| || || ||||
Sbjct 148067 GACCCTCCTCCTTAGCCAACTGCACCGACATAG---TAAGGGCAGCATGGTAGATTGTCT 148011
Query 110036 CAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----GACCA 110088
| || || | || ||||| |||| || | | |||||||| | ||
Sbjct 148010 CGAATATCT---TCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAG 147954
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| ||| || ||||||| |||||||| |||||||||||||||||||| || ||||
Sbjct 147953 CCAAG----AAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATG 147898
Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208
|| | || || | || ||||| |||| || |||| | ||||| ||
Sbjct 147897 TTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTG 147838
Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268
||| || |||| || ||||| || | | | ||| | | | ||| ||
Sbjct 147837 CGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GACACC--CTCGTTG 147781
Query 110269 TTG---ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325
| | || || |||| | |||| || || || || ||||||| ||||||
Sbjct 147780 TAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 147721
Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385
||| ||| || | || || || || | |||||| || ||| ||||| |||||||
Sbjct 147720 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 147661
Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445
|| || |||| |||| |||||||| ||||||||| | ||| | || || || ||
Sbjct 147660 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 147601
Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGAC 110503
|| | || ||| ||||| | ||| | | ||| | || ||||| | | |
Sbjct 147600 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG--ACCCTTGC 147543
Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563
| || |||||||| ||| ||| |||| || |||| ||||| || | |||||
Sbjct 147542 CCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 147483
Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623
| || | ||| || | || | ||| | ||| || || || ||||||||||
Sbjct 147482 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 147423
Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683
| || ||||| ||||| | || ||||||||||||| || ||||||| | || |
Sbjct 147422 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 147363
Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743
|||| || || || |||||||| | || ||| | |||||| || |||||||||| |
Sbjct 147362 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 147303
Query 110744 CGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800
| | | || ||| || |||||| || || || || ||| ||| ||||
Sbjct 147302 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 147243
Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860
| | |||||| |||| || || | ||| ||||| || || ||| ||
Sbjct 147242 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 147183
Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920
| || || ||| ||||| | | |||||| ||||| ||| ||| || ||| |
Sbjct 147182 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 147123
Query 110921 A-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979
| ||| |||| || | |||||||| || || || || | || || | | || |||
Sbjct 147122 AGGTCT-TGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 147064
Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039
|||||||||| ||| | | || || || || |||||||||||||| | || ||| ||
Sbjct 147063 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 147004
Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073
| ||| |||| |||||| |||||| || ||||
Sbjct 147003 A--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGA 146970
>seq1264
Length=384609
Score = 93.3 bits (102), Expect = 5e-14
Identities = 274/416 (66%), Gaps = 11/416 (3%)
Strand=Plus/Plus
Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647
||| ||| |||||||| || ||||||| |||||| | || || ||||| ||||||
Sbjct 257108 TGTTGAAGCCGTCCATCTCGGTGAGAATCTGGTTCAGGGTGGCCTCGCGCTCGTCGTTGC 257167
Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704
| ||||| | || || | | | |||| ||||| ||||| || ||||| |
Sbjct 257168 CGCCCATACGATTGCCCTCCTGTCTCGACCGGCCGATGGCGTCGATCTCGTCAATGAAGA 257227
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
|| || || ||| || ||| |||| || || || || | | || |
Sbjct 257228 TAATGCAGGGGGCGTTCTTCCGCGCCGTCGCGAACAGATCGCGGACTCTGGAGGGACCGA 257287
Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822
| || ||||||||||| ||||| | | | || | | ||||| |||||| || |||
Sbjct 257288 CGCCGACGAACATCTCGACGAACTCGGAACCGCTCA-CGCTGAA-GAAGGGCACGCCAGA 257345
Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882
||| ||||| | || ||||| || |||||||| || || || | || || || |
Sbjct 257346 CTCGCCAGCCGTCGCCTTGGCGAGCAGCGTCTTACCAGTTCCGGGAGGGCCGGCCAGGAT 257405
Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940
|| || ||||| |||||||| || || || | ||||||| || |||||||||||
Sbjct 257406 AGCACCGCGGGGAATCTTGGCGCCTAACCTCTCGA--AGCGCTCTGGGGTCTTGAGGAAG 257463
Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996
|||| |||| || ||| |||||| ||| || || | || ||| ||||
Sbjct 257464 CTGACAAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCGACGTCGCTGAA 257519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588964036425000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |