Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq501 255 7e-63 seq1264 93.3 5e-14 >seq501 Length=177797 Score = 255 bits (282), Expect = 7e-63 Identities = 1026/1596 (64%), Gaps = 61/1596 (4%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563 ||||| ||||| |||||||| |||||| || || ||||| | | | | ||| || Sbjct 148533 GACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCT-- 148476 Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623 || |||||||| |||||||||||||| ||| | || ||||||| |||| Sbjct 148475 -GGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATG 148417 Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGA 109680 || || ||||| ||| || | |||| | | |||||| | | ||||| ||| Sbjct 148416 TTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGA 148360 Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAA 109738 || | | ||| || | ||||| | | ||||| || ||| || ||||||| Sbjct 148359 CCCATGTCGACGAGGTCCTT--CAAGAGCCAAGGGTTGACGACTTGAAACTCGCCAGCAA 148302 Query 109739 GTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGA 109798 | || || |||| ||||| | |||||||| ||||| |||||||||||||| | || Sbjct 148301 GGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGA 148242 Query 109799 TTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCG 109858 | || | ||| || || |||||||| || | ||| ||| ||| |||| ||| | | Sbjct 148241 TCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCT 148182 Query 109859 TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT 109918 ||| | | |||| || |||||||| || | || | | | | || | ||| Sbjct 148181 GCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATC-CGA-----GGGCTTAACAT 148128 Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978 |||||| || || || | |||| || | |||| ||||||| | | ||| ||| | Sbjct 148127 TCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 148068 Query 109979 ACCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 ||||| ||| ||||||| | || || || || ||||| || || |||| Sbjct 148067 GACCCTCCTCCTTAGCCAACTGCACCGACATAG---TAAGGGCAGCATGGTAGATTGTCT 148011 Query 110036 CAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----GACCA 110088 | || || | || ||||| |||| || | | |||||||| | || Sbjct 148010 CGAATATCT---TCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAG 147954 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | ||| || ||||||| |||||||| |||||||||||||||||||| || |||| Sbjct 147953 CCAAG----AAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATG 147898 Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || | || || | || ||||| |||| || |||| | ||||| || Sbjct 147897 TTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTG 147838 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268 ||| || |||| || ||||| || | | | ||| | | | ||| || Sbjct 147837 CGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GACACC--CTCGTTG 147781 Query 110269 TTG---ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 | | || || |||| | |||| || || || || ||||||| |||||| Sbjct 147780 TAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 147721 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 ||| ||| || | || || || || | |||||| || ||| ||||| ||||||| Sbjct 147720 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 147661 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || || |||| |||| |||||||| ||||||||| | ||| | || || || || Sbjct 147660 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 147601 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGAC 110503 || | || ||| ||||| | ||| | | ||| | || ||||| | | | Sbjct 147600 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG--ACCCTTGC 147543 Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563 | || |||||||| ||| ||| |||| || |||| ||||| || | ||||| Sbjct 147542 CCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 147483 Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623 | || | ||| || | || | ||| | ||| || || || |||||||||| Sbjct 147482 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 147423 Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683 | || ||||| ||||| | || ||||||||||||| || ||||||| | || | Sbjct 147422 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 147363 Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743 |||| || || || |||||||| | || ||| | |||||| || |||||||||| | Sbjct 147362 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 147303 Query 110744 CGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | | | || ||| || |||||| || || || || ||| ||| |||| Sbjct 147302 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 147243 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860 | | |||||| |||| || || | ||| ||||| || || ||| || Sbjct 147242 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 147183 Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920 | || || ||| ||||| | | |||||| ||||| ||| ||| || ||| | Sbjct 147182 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 147123 Query 110921 A-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 | ||| |||| || | |||||||| || || || || | || || | | || ||| Sbjct 147122 AGGTCT-TGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 147064 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039 |||||||||| ||| | | || || || || |||||||||||||| | || ||| || Sbjct 147063 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 147004 Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073 | ||| |||| |||||| |||||| || |||| Sbjct 147003 A--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGA 146970 >seq1264 Length=384609 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| || ||||||| |||||| | || || ||||| |||||| Sbjct 257108 TGTTGAAGCCGTCCATCTCGGTGAGAATCTGGTTCAGGGTGGCCTCGCGCTCGTCGTTGC 257167 Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | ||||| | || || | | | |||| ||||| ||||| || ||||| | Sbjct 257168 CGCCCATACGATTGCCCTCCTGTCTCGACCGGCCGATGGCGTCGATCTCGTCAATGAAGA 257227 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 || || || ||| || ||| |||| || || || || | | || | Sbjct 257228 TAATGCAGGGGGCGTTCTTCCGCGCCGTCGCGAACAGATCGCGGACTCTGGAGGGACCGA 257287 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 | || ||||||||||| ||||| | | | || | | ||||| |||||| || ||| Sbjct 257288 CGCCGACGAACATCTCGACGAACTCGGAACCGCTCA-CGCTGAA-GAAGGGCACGCCAGA 257345 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| ||||| | || ||||| || |||||||| || || || | || || || | Sbjct 257346 CTCGCCAGCCGTCGCCTTGGCGAGCAGCGTCTTACCAGTTCCGGGAGGGCCGGCCAGGAT 257405 Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940 || || ||||| |||||||| || || || | ||||||| || ||||||||||| Sbjct 257406 AGCACCGCGGGGAATCTTGGCGCCTAACCTCTCGA--AGCGCTCTGGGGTCTTGAGGAAG 257463 Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| |||| || ||| |||||| ||| || || | || ||| |||| Sbjct 257464 CTGACAAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCGACGTCGCTGAA 257519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964036425000