Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 152 1e-31
seq1045 134 3e-26
seq1103 107 4e-18
seq501 84.2 5e-11
>seq1539
Length=122776
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||| ||||| || ||||| ||||| || | | ||| | ||||||||
Sbjct 51030 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 50971
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || | || || ||||| ||||||||||| || ||||| |||
Sbjct 50970 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 50911
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || || |||||||| ||| || || || || | ||||||
Sbjct 50910 ATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTT 50851
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 50850 CCAGTCAATGTCTTGACGAAGATCTGCAT 50822
Score = 113 bits (124), Expect = 1e-19
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| |||||||| || ||||||||||| |||| || || | || || || |||||
Sbjct 50518 GTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTG 50459
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||||||||| || || ||||| ||||| || || || ||||| ||||| ||
Sbjct 50458 CTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 50399
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||| || || || || || || || || || || | ||||| || ||
Sbjct 50398 GGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGT 50339
>seq1045
Length=66817
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| |||| || || | || || |||
Sbjct 49757 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 49816
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 49817 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 49876
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 49877 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 49936
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 49937 CCCGTGAGGGTCTTCACGAAGATCTGCAT 49965
>seq1103
Length=171845
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| || || | ||||| ||||||||||| || ||||||||
Sbjct 93387 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 93328
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| || || ||||| || ||||| || || || |||||| || ||
Sbjct 93327 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 93268
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || || || |||||||||| ||||| || |||| || || |||||
Sbjct 93267 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 93209
>seq501
Length=177797
Score = 84.2 bits (92), Expect = 5e-11
Identities = 172/253 (68%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669
||||| |||||||||||||| || | || || || |||| ||| | || ||||||||
Sbjct 147416 GATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAG 147475
Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729
||||| |||| || || ||| ||||||||| | | || || | ||||||
Sbjct 147476 TGCCCTGGTCTTGCCGACTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAA 147535
Query 160730 -AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGT 160788
| | || ||| | | || || | ||||||||| | || ||| || |||||| |
Sbjct 147536 CAGATGGGCAAGGGTCGCAAGACTC-TTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGA 147594
Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAG 160848
|| ||| |||| || | ||||| || ||||||||||| | ||||| ||
Sbjct 147595 GGCTCAAACCGAGACAGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAG 147654
Query 160849 TAACCAGAAGAAC 160861
||||||||||||
Sbjct 147655 CAACCAGAAGAAC 147667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109458500246375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |