Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 95.1 8e-15
>seq1045
Length=66817
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 49757 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 49816
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || || |||||||| | || | |||||||||||
Sbjct 49817 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 49876
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 49877 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 49932
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| |||||||| |||||||||||
Sbjct 49933 CTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 49965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324627170733000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |