Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 86.0 5e-11
>seq1539
Length=122776
Score = 86.0 bits (94), Expect = 5e-11
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| || | |||||||| ||| ||||| || ||||| || | |||||
Sbjct 50812 GAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGG--ATGTTGTAGTCCGAGAGAGTG 50755
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||| ||||| || || || ||||| || | | ||||||||||||||| || |||
Sbjct 50754 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCT 50695
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432
|| || || ||||| || || || || || ||||||| | || | | |||||
Sbjct 50694 TCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAG-GACTCAACCTCGAG 50636
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464
||| | || || |||||||| || || ||||
Sbjct 50635 AGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 50604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029210062671250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |