Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1539 86.0 5e-11 >seq1539 Length=122776 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | |||||||| ||| ||||| || ||||| || | ||||| Sbjct 50812 GAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGG--ATGTTGTAGTCCGAGAGAGTG 50755 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||| || || || ||||| || | | ||||||||||||||| || ||| Sbjct 50754 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCT 50695 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432 || || || ||||| || || || || || ||||||| | || | | ||||| Sbjct 50694 TCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAG-GACTCAACCTCGAG 50636 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| | || || |||||||| || || |||| Sbjct 50635 AGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 50604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029210062671250