Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq831 84.2 2e-11 >seq831 Length=133518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/347 (67%), Gaps = 14/347 (4%) Strand=Plus/Plus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 30102 |||||||| |||| | || |||||| | ||| | ||||| || ||| || || Sbjct 81148 GGGTTCCACGCGCTGAGGAGGATGCGGCGGTCATACGGGTTCGTCTTGAGCTTGTGGATA 81207 Query 30103 ACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 || || ||| |||| || || || |||| ||||| | | | ||| ||| Sbjct 81208 ACCTCG----GCAAGCTGGTCGACGCCTTGGCCCGTATAGTCCGTCTTGGCGTCGACGTA 81263 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 ||| || || || || | ||| |||||||| || || || || ||||| || |||| | Sbjct 81264 CTCGGCGCCAAAGTGTCGCCATTGGAACCCATAGACGGGGCCGAGGTCGCCGACTTCTCG 81323 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 || || ||| | || | || || | || |||||| ||||||| ||||| || Sbjct 81324 ATGAGAGAGGCCGACGCTATCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAAATCTTGAC 81383 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCT 30340 ||| |||| ||| ||| |||| ||||| |||||||||||||||||| Sbjct 81384 GCCCGCCTCGCTCAGCGGCAGAGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCGG 81442 Query 30341 CCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | | |||||| | || ||||| | ||| || ||||||||||||| Sbjct 81443 CAATGACGGC--ACGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 81487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609507456125