Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1539 96.9 3e-15 >seq1539 Length=122776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| || | | ||| | |||| |||| ||| Sbjct 51024 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGC 50965 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 50964 TTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTG 50905 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||| || || || |||| || || || || Sbjct 50904 GACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTC 50845 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 50844 AATGTCTTGACGAAGATCTGCAT 50822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270551830125