Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq501 297 4e-75 seq933 147 4e-30 >seq501 Length=177797 Score = 297 bits (328), Expect = 4e-75 Identities = 1040/1602 (65%), Gaps = 84/1602 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| || ||||||||||| ||||| Sbjct 148668 ACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTC 148609 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | ||| | Sbjct 148608 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATAGT 148559 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 148558 CGGGTCCTTCATGTGG---------ATGTTAAGGGACTGCGACTGGTCGATGAAGGCACC 148508 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | || | | |||||||| ||||| || |||||| | | Sbjct 148507 ACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAA 148448 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842 | | || | |||| | |||| | |||||||||||| | ||| || | | || Sbjct 148447 TGCCTTCA---CCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAAT 148391 Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | | | | | ||| | ||| ||| || ||| || | ||| ||| | || Sbjct 148390 GATACGGTTCTT---CATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAG 148334 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 ||||||||| | || || || || | || || | | ||||||| ||| || || Sbjct 148333 CCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGT 148274 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||||||||||| || ||| ||||| |||| ||||| | |||||||| || |||||||| Sbjct 148273 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 148214 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || ||| ||| | || ||||||| ||| | | || | |||| Sbjct 148213 CGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCA 148154 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| | ||| || ||||||||||| |||| | ||||| Sbjct 148153 GTCCCAG---------AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCC 148103 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | || ||| |||| ||| | |||||| || | |||||| |||| || ||| Sbjct 148102 CTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA 148044 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||| | |||||| || || ||||||| | ||||||| | | Sbjct 148043 CCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAG 147984 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | || || ||| ||||||||| | ||| |||| || || ||||| || | Sbjct 147983 CTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACAC 147924 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381 ||| || ||||| | ||| | || ||| ||| | ||||| | ||||| || Sbjct 147923 CGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGT 147864 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || || ||||| ||||||||||||| | | || | |||||| | | || | || Sbjct 147863 TGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCT 147804 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495 | || ||||| | || || | || || |||| ||| | || Sbjct 147803 GG------AAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAGG 147750 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||||||| || || || ||||| | || | | |||||| |||||||| ||||| |||| Sbjct 147749 CCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGT 147690 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTG 213614 || || |||||||| |||||||||| ||||| | |||||| ||||||| ||||||| Sbjct 147689 TGGAGCTACGGATGGTACCCAGGTTCTTCTGGTT-GCTTTTGCGGTTGGCAGCATCCTTG 147631 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 ||||||||| ||||| || ||||| || | | | || || ||| |||||| | Sbjct 147630 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT--GGCATACCAGAGCT 147573 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC--TCGTACTGTTCGTAGAG 213730 |||||| | | | ||| || || | | ||||||| ||||| | Sbjct 147572 TTTGGGCCTTAAGAGTCTTGC-GAC----CCTTGCCCATCTGTTCGTACTTCTCGTATAA 147518 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAG 213790 | | ||| || | || || | | || || || || ||| ||||| || Sbjct 147517 GGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAG 147458 Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 ||||||| |||| | | ||| ||||||| |||||| || || |||| ||| || || Sbjct 147457 AGTCCAGTCTCCGTTCTTTTCT-ACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 147399 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 ||| ||||| | || | ||| ||| ||| ||| || |||||||||| ||||| Sbjct 147398 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 147339 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGC 213966 | |||| || |||||||| ||||| | ||||||||||| || || | || | |||| Sbjct 147338 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 147279 Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026 | |||||||| || || || | || |||| || || | ||| || | |||| Sbjct 147278 CACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 147219 Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084 |||| || ||||| || || || || ||||||| || | || ||| |||| Sbjct 147218 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACG 147163 Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 ||| || |||||||| || |||||||||||| |||||| Sbjct 147162 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAG 147121 >seq933 Length=137956 Score = 147 bits (162), Expect = 4e-30 Identities = 340/505 (67%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| | || | || ||||||||||| ||||| || ||| ||||| |||||| Sbjct 11533 TGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCC 11474 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 || ||| ||||||||||| | || || ||| |||| ||| | ||| || Sbjct 11473 ATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAG 11415 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 11414 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 11355 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || | |||| || || ||||||| ||| |||| ||||| || | | || | Sbjct 11354 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 11295 Query 48079 CT---TAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || |||| | | ||| || | || ||| ||||| || || || | ||||| Sbjct 11294 CTCGATAAC-CTGCTTGCTGGGGCGGTTCTTG---AGGTG---GGAGTACAGGAGGCAGG 11242 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| || ||||| || ||||||| |||||||||| ||||| | Sbjct 11241 CGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGG 11182 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | ||||| | ||| |||||| || | Sbjct 11181 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATAC 11122 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || | | || |||| || | |||| || |||| Sbjct 11121 CCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTTCTCATCGCTAATCC 11062 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTT 48339 | || |||||||| |||||||| Sbjct 11061 ACTTGAGGGCCCAGTCGGCCTTCTT 11037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513878240000