Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq501 334 1e-86 seq933 138 2e-27 >seq501 Length=177797 Score = 334 bits (370), Expect = 1e-86 Identities = 854/1280 (67%), Gaps = 51/1280 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||| ||||| || ||| |||||||||| || | || || || Sbjct 148035 GTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCAGG 147977 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| || || | ||| | || || || ||||| || |||| ||| Sbjct 147976 AGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACC 147917 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | |||| | || |||| |||| || |||||| Sbjct 147916 AATGGGGCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGGACCGGG-TAGTGGTTGACA 147859 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | |||||||||| || || || | |||||| ||||||||| Sbjct 147858 TCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAG 147799 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || |||| || || || || || | | | ||||| | Sbjct 147798 TCGTAGACACCCTCGT--------TGTAG----TCAACGAATGTGGGCAAGGCAAGCGAG 147751 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||||||||| || |||||||| || |||| |||||||| || |||||| Sbjct 147750 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 147691 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| ||||||| || || || ||||| |||||||| |||||| Sbjct 147690 TTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTG 147631 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| ||||| ||| ||||| |||||| | || || | |||||| | | Sbjct 147630 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTT 147571 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGA 221948 ||| | | ||| ||| ||||| | ||| ||| ||| | ||||| Sbjct 147570 TGGGCCTTAAGAGTC---TTGCG---ACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 147517 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| |||||||| ||| | || || || ||| ||| ||||| | Sbjct 147516 GCCT--CGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAA 147459 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 || |||||| ||| | || || |||| ||||||||| || |||||||| || || Sbjct 147458 GAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 147399 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || || || | || || ||| ||| ||| | ||| |||| |||||| ||||| | Sbjct 147398 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 147339 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | || |||||||| ||||| ||||||| ||| | ||| ||||| |||||||||| Sbjct 147338 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 147279 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| || | | | | ||| | || |||| || || | || || | ||| Sbjct 147278 CACCCTGGTCGA-CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 147220 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 ||||| || |||||||| |||||| | ||| || | || | | || ||| Sbjct 147219 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGAC 147164 Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 | || || ||||| || || |||||||| |||||| ||||||| ||||| Sbjct 147163 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTA 147104 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 || ||||| ||||||||||| || | || | || || ||||| |||| ||| | || Sbjct 147103 AATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTG 147044 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 || || || ||||| || || || ||| |||||| || ||| | || |||||||| Sbjct 147043 GGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAG 146984 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540 | ||| ||||| | ||| | | | |||||| ||| || ||| | ||| | Sbjct 146983 GTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGA---TGCCAACAGCGACACG 146927 Query 222541 CATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 |||| ||||| |||||| ||||| || || | |||| || ||||||||| Sbjct 146926 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGAT 146869 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 | |||| |||||||| || ||||| | | || ||||| | | ||| || | ||| Sbjct 146868 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCA 146809 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 146808 GAGTCAAGCTCCTCCTTGTG 146789 >seq933 Length=137956 Score = 138 bits (152), Expect = 2e-27 Identities = 299/451 (66%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| ||||| |||||||| ||||| || || ||||| ||| | || || ||| Sbjct 11092 AGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCA 11151 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| || ||||||||||||||| Sbjct 11152 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCT 11211 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || || |||||||| || ||| | |||| ||| Sbjct 11212 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCAC---CTCA 11265 Query 26057 ACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 | || || |||| || || | ||||| || || || |||| ||| Sbjct 11266 AGAACCGCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGC 11325 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| | | ||||||||| || || |||| Sbjct 11326 AGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGA 11385 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231 || |||||||||| || ||||||| || || ||| || || || || | Sbjct 11386 AGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGC--TCTTGGCAACGACAAGGT 11443 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 |||| | | ||||| |||||||||||||| || || || ||| || |||||||| Sbjct 11444 TTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 11503 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||||||| | || | |||||| ||| Sbjct 11504 CTTCTTTGAAAAGCGTGTTGCCGACTACCAA 11534 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || ||||||||| || |||||||||||| Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593 | |||||| || ||| |||| || | ||| | | || ||| || | || || | Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || || ||||| || |||| | Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || | ||| | | |||||| || |||||||| |||||||| Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCT-GAGGCCCGCTGCTTCTACGGCTTCCAGAT 10862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825932840000