Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq501 334 1e-86
seq933 138 2e-27
>seq501
Length=177797
Score = 334 bits (370), Expect = 1e-86
Identities = 854/1280 (67%), Gaps = 51/1280 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| |||||||| |||||||| ||||| || ||| |||||||||| || | || || ||
Sbjct 148035 GTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCAGG 147977
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||||||||| || || | ||| | || || || ||||| || |||| |||
Sbjct 147976 AGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACC 147917
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| | ||| | | ||||| | |||| | || |||| |||| || ||||||
Sbjct 147916 AATGGGGCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGGACCGGG-TAGTGGTTGACA 147859
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | |||||||||| || || || | |||||| |||||||||
Sbjct 147858 TCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAG 147799
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | || |||| || || || || || | | | ||||| |
Sbjct 147798 TCGTAGACACCCTCGT--------TGTAG----TCAACGAATGTGGGCAAGGCAAGCGAG 147751
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||||||||| || |||||||| || |||| |||||||| || ||||||
Sbjct 147750 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 147691
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| || |||||| ||||||| || || || ||||| |||||||| ||||||
Sbjct 147690 TTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTG 147631
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| ||||| ||| ||||| |||||| | || || | |||||| | |
Sbjct 147630 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTT 147571
Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGA 221948
||| | | ||| ||| ||||| | ||| ||| ||| | |||||
Sbjct 147570 TGGGCCTTAAGAGTC---TTGCG---ACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 147517
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008
|| | | |||| |||||||| ||| | || || || ||| ||| ||||| |
Sbjct 147516 GCCT--CGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAA 147459
Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
|| |||||| ||| | || || |||| ||||||||| || |||||||| || ||
Sbjct 147458 GAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 147399
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
| || || || | || || ||| ||| ||| | ||| |||| |||||| ||||| |
Sbjct 147398 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 147339
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
| || | || |||||||| ||||| ||||||| ||| | ||| ||||| ||||||||||
Sbjct 147338 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 147279
Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
||||||| || | | | | ||| | || |||| || || | || || | |||
Sbjct 147278 CACCCTGGTCGA-CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 147220
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307
||||| || |||||||| |||||| | ||| || | || | | || |||
Sbjct 147219 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGAC 147164
Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363
| || || ||||| || || |||||||| |||||| ||||||| |||||
Sbjct 147163 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTA 147104
Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423
|| ||||| ||||||||||| || | || | || || ||||| |||| ||| | ||
Sbjct 147103 AATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTG 147044
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
|| || || ||||| || || || ||| |||||| || ||| | || ||||||||
Sbjct 147043 GGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAG 146984
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540
| ||| ||||| | ||| | | | |||||| ||| || ||| | ||| |
Sbjct 146983 GTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGA---TGCCAACAGCGACACG 146927
Query 222541 CATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598
|||| ||||| |||||| ||||| || || | |||| || |||||||||
Sbjct 146926 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGAT 146869
Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658
| |||| |||||||| || ||||| | | || ||||| | | ||| || | |||
Sbjct 146868 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCA 146809
Query 222659 GCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 146808 GAGTCAAGCTCCTCCTTGTG 146789
>seq933
Length=137956
Score = 138 bits (152), Expect = 2e-27
Identities = 299/451 (66%), Gaps = 13/451 (3%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| ||||| |||||||| ||||| || || ||||| ||| | || || |||
Sbjct 11092 AGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCA 11151
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||||||| || || ||||||||| ||| || |||||||||||||||
Sbjct 11152 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCT 11211
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| ||||||||||| |||| || || |||||||| || ||| | |||| |||
Sbjct 11212 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCAC---CTCA 11265
Query 26057 ACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113
| || || |||| || || | ||||| || || || |||| |||
Sbjct 11266 AGAACCGCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGC 11325
Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173
||||||| | | ||||||||| || || ||||
Sbjct 11326 AGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGA 11385
Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231
|| |||||||||| || ||||||| || || ||| || || || || |
Sbjct 11386 AGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGC--TCTTGGCAACGACAAGGT 11443
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
|||| | | ||||| |||||||||||||| || || || ||| || ||||||||
Sbjct 11444 TTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 11503
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||||||||||||| | || | |||||| |||
Sbjct 11504 CTTCTTTGAAAAGCGTGTTGCCGACTACCAA 11534
Score = 89.7 bits (98), Expect = 1e-12
Identities = 163/234 (70%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || ||||||||| || ||||||||||||
Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593
| |||||| || ||| |||| || | ||| | | || ||| || | || || |
Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || || || || || || ||||| || |||| |
Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809
Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || | ||| | | |||||| || |||||||| ||||||||
Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCT-GAGGCCCGCTGCTTCTACGGCTTCCAGAT 10862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928825932840000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |