Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1347 426 2e-114 seq1045 179 5e-40 seq1539 174 2e-38 seq1406 116 5e-21 >seq1347 Length=243407 Score = 426 bits (472), Expect = 2e-114 Identities = 989/1483 (67%), Gaps = 22/1483 (1%) Strand=Plus/Minus Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465 ||| || || || || | || ||| | | ||||||||||| || || ||| || || Sbjct 219496 CGTCGCGTTCACCGACACAGAGCGTTTGATCGGAGATGCCGCCAAGAACCAGGTCGCGAT 219437 Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525 |||||| ||| || || || ||||| |||||||| || ||||||||||| ||| || Sbjct 219436 GAACCCGCACAACACCGTGTTCGACGCCAAGCGTCTGATCGGTCGCAAGTTCCAGGACAA 219377 Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGAT 195583 | || || | |||||| ||| ||| | | | ||| | || | | ||| Sbjct 219376 CGAGGTGCAGGCCGATATGAAGCACTTCCCGT-TCAAGGTCATCGACAAGAACGGC---- 219322 Query 195584 AAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATT 195643 |||||| ||| | ||||| || | || |||| || || | || || || || Sbjct 219321 AAGCCTGCCATTCAGGTTGAGTTCAAGGGCGAGACCAAGACCTTCACCCCTGAGGAGATC 219262 Query 195644 TCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTG 195703 || | ||||| | | |||||| ||||| || || || ||| ||||| || Sbjct 219261 TCTGCCATGGTTCTCACCAAGATGCGTGAGACCGCTGAGTCGTTCCTGGGTGGCCAGGTC 219202 Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 || | || || | ||||| || || ||||||| || || || || |||||||| ||| Sbjct 219201 AACAACGCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAG 219142 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823 ||||||| | |||||| ||||| ||| || | || ||||| || || || |||||| Sbjct 219141 GACGCTGGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCT 219082 Query 195824 GCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTT 195880 || || || || ||||| |||||||| || ||| | | | || || | ||||| Sbjct 219081 GCCATCGCCTACGGTCTTGACAAGAA---GGCCGAGGGTGAGCGCAACGTTCTCATCTTC 219025 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 ||||| ||||||||||| || ||||| || || || | ||||| | || || ||||| Sbjct 219024 GATCTTGGTGGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAG 218965 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000 || ||| |||| |||||||| || || | |||||||| || ||||| ||||| | Sbjct 218964 GTTAAGTCTACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTT 218905 Query 196001 CGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAG 196059 || || ||| | |||||| || ||| | ||||| ||| | || || | | Sbjct 218904 AACCACTTCGTC-AACGAGTTCAAGCGCAAGCACAAGAAGGATCTATCCACCAACGCCCG 218846 Query 196060 GGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGC 196119 ||||| || || || | || || || || |||||||| || ||||| || || | || Sbjct 218845 CGCTCTGCGCCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGC 218786 Query 196120 TCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTAC 196179 || || | ||||| || ||| | | || || ||||||||||| || | || || Sbjct 218785 CCAGACCTCTATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCAC 218726 Query 196180 CCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGA 196239 |||||| || ||||| ||| | | || |||| | || | || || || Sbjct 218725 CCGTGCCCGCTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGA 218666 Query 196240 ACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGG 196299 | || || ||||| ||||| || ||||| |||| | || || ||||| || || Sbjct 218665 CCGCGTCCTCACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGG 218606 Query 196300 AGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGA 196359 ||| || |||||||| || || || || | | || || |||||| || || Sbjct 218605 AGGTTCCACCCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGA 218546 Query 196360 TTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419 ||||| | |||||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 218545 GCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGC 218486 Query 196420 TATTCTCTCAGGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474 ||||| || || | | | | | || | ||||| ||||| || ||||| Sbjct 218485 CATTCTGTCTGGCGACACCTCCTCCAAGAGCACCAACGAGATC--CTGCTTCTCGATGTC 218428 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 || ||| | || || ||| | || || || ||||| | ||||| || | ||| | Sbjct 218427 GCTCCCCTCTCTCTCGGTATCGAGACCGCTGGTGGCATGATGACCAAGCTCATTCCCCGC 218368 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || || || || |||||| | ||||| || || | ||||| || || || Sbjct 218367 AACACCACCATCCCCACCAAGAAGTCTGAGGTCTTCTCCACCTTCTCCGACAACCAGCCC 218308 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | ||| || || || || || || ||| || | ||||| ||| | || || Sbjct 218307 GGTGTCCTTATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTC 218248 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | ||||| | || || ||||| | || ||| | |||||||| |||||| | || Sbjct 218247 GGCAAGTTCGAGCTTACCGGCATTCCCCCCGCTCCCCGCGGTGTTCCCCAGATTGAGGTC 218188 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 ||||||| | || || || || || | |||||| | || | || |||| | ||| Sbjct 218187 ACCTTCGATCTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACCGGC 218128 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || || | |||||||| || ||||| |||||||| || ||||| |||||||| || || Sbjct 218127 AAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTTTCCAAGGAGGACATCGAG 218068 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || ||| || || || || |||| || ||| || || |||| Sbjct 218067 CGCATGCTTGCTGAGGCCGAGAAGTTCAAGGACGAGGATGAGG 218025 >seq1045 Length=66817 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || ||||||||||| ||||| |||||||| Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| ||||| ||||| || || | || || ||||||| Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTG 49737 >seq1539 Length=122776 Score = 174 bits (192), Expect = 2e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||||||||| || || ||||| |||||||||||||| || || || ||||| Sbjct 50606 GTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCGAC 50665 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || |||| | |||||||| || ||||||||||| || || ||||||||||| | || Sbjct 50666 AATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTGATC 50725 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || |||||||| ||||| || || ||| | || |||||| | |||||||| Sbjct 50726 TTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAA 50785 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || ||| | || || | || || |||||| Sbjct 50786 TCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGT 50821 Score = 149 bits (164), Expect = 8e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || || | |||||||| || || || | ||||||||||| | Sbjct 51048 GTATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTT 51107 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| || || || | || | ||||| ||||| ||||| ||||| || || |||| Sbjct 51108 CGGACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATC 51167 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || ||||||||||| || || | || || || || ||||| ||||||| Sbjct 51168 AGCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACA 51227 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || |||||||| || || ||||| || || | || || || ||| Sbjct 51228 ACATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGT 51277 >seq1406 Length=275149 Score = 116 bits (128), Expect = 5e-21 Identities = 226/327 (69%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| ||| || | | | || || | || | | | || ||||| || Sbjct 272824 AAGATGAAGGAGGTTGCCGAGAGCTACCTTGGCAAGAAGGTCACACACGCCGTTGTTACC 272883 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || ||||| || ||||| || | | ||||| Sbjct 272884 GTTCCCGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCCGGTATCATTGCC 272943 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 ||||| || ||| || | ||| |||| || || || || || || || || || ||||| Sbjct 272944 GGTCTCAA-TGTCCTCCGCATTGTCAACGAGCCCACTGCCGCCGCTATCGCCTACGGTCT 273002 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| | | || || | || |||| ||| || ||||| |||||||| || Sbjct 273003 TGACAAGACTGACGGCG-AGCGCCAGAT-CATTG-TCTACGACCTCGGCGGTGGTACCTT 273059 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||||| || ||| || || |||| | ||||| || ||||||||| ||||| Sbjct 273060 CGATGTCTCCCTGCTCTCCATCGACCATGGTGTCTTCGAGGTCTTGGCTACTGCCGGTGA 273119 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| | |||||||| || ||||| Sbjct 273120 CACTCACTTGGGTGGTGAGGACTTCGA 273146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657849037170000