Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq1347 426 2e-114
seq1045 179 5e-40
seq1539 174 2e-38
seq1406 116 5e-21
>seq1347
Length=243407
Score = 426 bits (472), Expect = 2e-114
Identities = 989/1483 (67%), Gaps = 22/1483 (1%)
Strand=Plus/Minus
Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465
||| || || || || | || ||| | | ||||||||||| || || ||| || ||
Sbjct 219496 CGTCGCGTTCACCGACACAGAGCGTTTGATCGGAGATGCCGCCAAGAACCAGGTCGCGAT 219437
Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525
|||||| ||| || || || ||||| |||||||| || ||||||||||| ||| ||
Sbjct 219436 GAACCCGCACAACACCGTGTTCGACGCCAAGCGTCTGATCGGTCGCAAGTTCCAGGACAA 219377
Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGAT 195583
| || || | |||||| ||| ||| | | | ||| | || | | |||
Sbjct 219376 CGAGGTGCAGGCCGATATGAAGCACTTCCCGT-TCAAGGTCATCGACAAGAACGGC---- 219322
Query 195584 AAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATT 195643
|||||| ||| | ||||| || | || |||| || || | || || || ||
Sbjct 219321 AAGCCTGCCATTCAGGTTGAGTTCAAGGGCGAGACCAAGACCTTCACCCCTGAGGAGATC 219262
Query 195644 TCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTG 195703
|| | ||||| | | |||||| ||||| || || || ||| ||||| ||
Sbjct 219261 TCTGCCATGGTTCTCACCAAGATGCGTGAGACCGCTGAGTCGTTCCTGGGTGGCCAGGTC 219202
Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763
|| | || || | ||||| || || ||||||| || || || || |||||||| |||
Sbjct 219201 AACAACGCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAG 219142
Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823
||||||| | |||||| ||||| ||| || | || ||||| || || || ||||||
Sbjct 219141 GACGCTGGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCT 219082
Query 195824 GCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTT 195880
|| || || || ||||| |||||||| || ||| | | | || || | |||||
Sbjct 219081 GCCATCGCCTACGGTCTTGACAAGAA---GGCCGAGGGTGAGCGCAACGTTCTCATCTTC 219025
Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940
||||| ||||||||||| || ||||| || || || | ||||| | || || |||||
Sbjct 219024 GATCTTGGTGGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAG 218965
Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000
|| ||| |||| |||||||| || || | |||||||| || ||||| ||||| |
Sbjct 218964 GTTAAGTCTACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTT 218905
Query 196001 CGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAG 196059
|| || ||| | |||||| || ||| | ||||| ||| | || || | |
Sbjct 218904 AACCACTTCGTC-AACGAGTTCAAGCGCAAGCACAAGAAGGATCTATCCACCAACGCCCG 218846
Query 196060 GGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGC 196119
||||| || || || | || || || || |||||||| || ||||| || || | ||
Sbjct 218845 CGCTCTGCGCCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGC 218786
Query 196120 TCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTAC 196179
|| || | ||||| || ||| | | || || ||||||||||| || | || ||
Sbjct 218785 CCAGACCTCTATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCAC 218726
Query 196180 CCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGA 196239
|||||| || ||||| ||| | | || |||| | || | || || ||
Sbjct 218725 CCGTGCCCGCTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGA 218666
Query 196240 ACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGG 196299
| || || ||||| ||||| || ||||| |||| | || || ||||| || ||
Sbjct 218665 CCGCGTCCTCACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGG 218606
Query 196300 AGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGA 196359
||| || |||||||| || || || || | | || || |||||| || ||
Sbjct 218605 AGGTTCCACCCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGA 218546
Query 196360 TTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419
||||| | |||||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 218545 GCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGC 218486
Query 196420 TATTCTCTCAGGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474
||||| || || | | | | | || | ||||| ||||| || |||||
Sbjct 218485 CATTCTGTCTGGCGACACCTCCTCCAAGAGCACCAACGAGATC--CTGCTTCTCGATGTC 218428
Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534
|| ||| | || || ||| | || || || ||||| | ||||| || | ||| |
Sbjct 218427 GCTCCCCTCTCTCTCGGTATCGAGACCGCTGGTGGCATGATGACCAAGCTCATTCCCCGC 218368
Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594
||||| || || || || |||||| | ||||| || || | ||||| || || ||
Sbjct 218367 AACACCACCATCCCCACCAAGAAGTCTGAGGTCTTCTCCACCTTCTCCGACAACCAGCCC 218308
Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654
||||| | ||| || || || || || || ||| || | ||||| ||| | || ||
Sbjct 218307 GGTGTCCTTATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTC 218248
Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714
|| | ||||| | || || ||||| | || ||| | |||||||| |||||| | ||
Sbjct 218247 GGCAAGTTCGAGCTTACCGGCATTCCCCCCGCTCCCCGCGGTGTTCCCCAGATTGAGGTC 218188
Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774
||||||| | || || || || || | |||||| | || | || |||| | |||
Sbjct 218187 ACCTTCGATCTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACCGGC 218128
Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834
|| || | |||||||| || ||||| |||||||| || ||||| |||||||| || ||
Sbjct 218127 AAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTTTCCAAGGAGGACATCGAG 218068
Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
|| ||| || || || || |||| || ||| || || ||||
Sbjct 218067 CGCATGCTTGCTGAGGCCGAGAAGTTCAAGGACGAGGATGAGG 218025
>seq1045
Length=66817
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| |||
Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || ||||| | || ||||||
Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| ||||| ||||| || || | || || |||||||
Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTG 49737
>seq1539
Length=122776
Score = 174 bits (192), Expect = 2e-38
Identities = 168/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || ||||||||||| || || ||||| |||||||||||||| || || || |||||
Sbjct 50606 GTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCGAC 50665
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
|| |||| | |||||||| || ||||||||||| || || ||||||||||| | ||
Sbjct 50666 AATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTGATC 50725
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
|||||||| || |||||||| ||||| || || ||| | || |||||| | ||||||||
Sbjct 50726 TTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAA 50785
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| || || ||| | || || | || || ||||||
Sbjct 50786 TCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGT 50821
Score = 149 bits (164), Expect = 8e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||||||||| || || || | |||||||| || || || | ||||||||||| |
Sbjct 51048 GTATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTT 51107
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| ||||| || || || | || | ||||| ||||| ||||| ||||| || || ||||
Sbjct 51108 CGGACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATC 51167
Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039
|||| || || ||||||||||| || || | || || || || ||||| |||||||
Sbjct 51168 AGCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACA 51227
Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | || |||||||| || || ||||| || || | || || || |||
Sbjct 51228 ACATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGT 51277
>seq1406
Length=275149
Score = 116 bits (128), Expect = 5e-21
Identities = 226/327 (69%), Gaps = 5/327 (2%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
|||||||||||| ||| || | | | || || | || | | | || ||||| ||
Sbjct 272824 AAGATGAAGGAGGTTGCCGAGAGCTACCTTGGCAAGAAGGTCACACACGCCGTTGTTACC 272883
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| || || || ||||| || ||||| || | | |||||
Sbjct 272884 GTTCCCGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCCGGTATCATTGCC 272943
Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840
||||| || ||| || | ||| |||| || || || || || || || || || |||||
Sbjct 272944 GGTCTCAA-TGTCCTCCGCATTGTCAACGAGCCCACTGCCGCCGCTATCGCCTACGGTCT 273002
Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900
||||||| | | || || | || |||| ||| || ||||| |||||||| ||
Sbjct 273003 TGACAAGACTGACGGCG-AGCGCCAGAT-CATTG-TCTACGACCTCGGCGGTGGTACCTT 273059
Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960
|||||||| || ||| || || |||| | ||||| || ||||||||| |||||
Sbjct 273060 CGATGTCTCCCTGCTCTCCATCGACCATGGTGTCTTCGAGGTCTTGGCTACTGCCGGTGA 273119
Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| | |||||||| || |||||
Sbjct 273120 CACTCACTTGGGTGGTGAGGACTTCGA 273146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657849037170000
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