Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq501 179 1e-39
seq1198 100 8e-16
seq1180 87.8 5e-12
>seq501
Length=177797
Score = 179 bits (198), Expect = 1e-39
Identities = 483/731 (66%), Gaps = 27/731 (4%)
Strand=Plus/Minus
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
|||||| ||| ||||| || || |||||| || | ||||||||||| ||| | |
Sbjct 147705 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGG 147646
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| |||||||||||| || ||| | ||| | |||||||| | || || || || ||
Sbjct 147645 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATG 147586
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTG------TTGT--ATCTGCCTTCCGACT 155811
|||||| | |||| |||| |||| ||| ||||| ||| |||
Sbjct 147585 GCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTG--TTCGTACT 147528
Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871
| || |||| || | | | ||||||||||| || || || ||||||||||
Sbjct 147527 ----TCTCGTATAAGGCCTC--GAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACT 147474
Query 155872 TATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACAT 155928
|| |||||| | || | ||| | || || | ||| | || ||| || | ||
Sbjct 147473 CATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTC---TACTCTCTTCATGAAGAGAT 147417
Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988
|| ||||| |||| ||||||||| | || ||| || | ||| || ||||
Sbjct 147416 CAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCT 147357
Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048
|||| || ||||| || || | ||| | || ||||| ||||| || ||||||
Sbjct 147356 TCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAG 147297
Query 156049 TACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
||| | | | ||||||||||| || || ||||||||||| ||||| ||||||| |
Sbjct 147296 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGA 147237
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| |||| ||||| ||||| ||||||||||| ||| ||| | || || | | ||
Sbjct 147236 GCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC 147177
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCC 156224
| | || | | || ||||| ||||| | |||| || || || ||||| |
Sbjct 147176 GGATGCGGTGGACGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATTGCGCAGGTC 147118
Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284
|| | || | | ||||||| || ||||| || |||| ||| | || |||| |||
Sbjct 147117 TTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAA 147058
Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344
| || | | | || || ||||||||||| |||||||| | || ||| | || ||
Sbjct 147057 GACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAAC 146998
Query 156345 TTATTAGACAT 156355
|| | |||||
Sbjct 146997 TTGCTCGACAT 146987
>seq1198
Length=63640
Score = 100 bits (110), Expect = 8e-16
Identities = 181/262 (69%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||| || || || ||||||||| | || || || || ||||| || |
Sbjct 56822 CTTGACGAGACGGCGTTGGATGTAACCAGTTTCGGCAGTCTTGACTGCAGTATCGATCAA 56763
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701
||| | | |||| ||||||||||||| || | || | || |||| | || | |
Sbjct 56762 ACCCTCTCTACCAGCCATAGCATGGAAAAAGAATTCA-CTGGGCGTAAGACCACGGAGGT 56704
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| | || || || || || |||||||| || | |||| |||||| || || || |
Sbjct 56703 ATGAGTTTTCGACAAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 56644
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | ||||||||||| || || ||| |||||||||| |
Sbjct 56643 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACGATCTGCTGTCCGACAA 56584
Query 302822 ACGAAATCATCTGCGAAATATT 302843
| | ||||||| ||||| ||
Sbjct 56583 GGGCAGTCATCTGGGAAATGTT 56562
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||||| || | | ||| ||||||||| | || ||||| |||||| | |||||||||
Sbjct 57613 AGAATCTCCTTGAGACGAGGAACACCAAGCGTGACGTT---CTTGGAAGAAACACCAGCG 57557
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| |||| || | || |||| ||||||||||| || || |||||
Sbjct 57556 AAATGGAAAGTGTTCAACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATG 57497
Query 301933 ATACCAACCATTTCTCCTGG 301952
| || |||||||| || ||
Sbjct 57496 ACGCCCACCATTTCACCAGG 57477
>seq1180
Length=32876
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||| || |||||||| || |||||||| || | |
Sbjct 18915 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 18856
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957
|| || || |||||||||||||||| | || ||| | |||||||| ||||| ||
Sbjct 18855 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATAGTACCCTTCTG 18797
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||| || |||||| || |||||
Sbjct 18796 ACCGTGACGCGACGCGAACTTGTCGCCAAT 18767
Score = 86.0 bits (94), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | ||||||||||||||||||||| || |||||||| |||||||| || ||
Sbjct 19269 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAGACCACCGTCACGT 19210
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | |||||| | |||||
Sbjct 19209 GCACGACCCTCCACTGGCTG 19190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471786956297625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |