Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq501 179 1e-39 seq1198 100 8e-16 seq1180 87.8 5e-12 >seq501 Length=177797 Score = 179 bits (198), Expect = 1e-39 Identities = 483/731 (66%), Gaps = 27/731 (4%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| || || |||||| || | ||||||||||| ||| | | Sbjct 147705 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGG 147646 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||| || ||| | ||| | |||||||| | || || || || || Sbjct 147645 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATG 147586 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTG------TTGT--ATCTGCCTTCCGACT 155811 |||||| | |||| |||| |||| ||| ||||| ||| ||| Sbjct 147585 GCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTG--TTCGTACT 147528 Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871 | || |||| || | | | ||||||||||| || || || |||||||||| Sbjct 147527 ----TCTCGTATAAGGCCTC--GAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACT 147474 Query 155872 TATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACAT 155928 || |||||| | || | ||| | || || | ||| | || ||| || | || Sbjct 147473 CATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTC---TACTCTCTTCATGAAGAGAT 147417 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988 || ||||| |||| ||||||||| | || ||| || | ||| || |||| Sbjct 147416 CAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCT 147357 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 |||| || ||||| || || | ||| | || ||||| ||||| || |||||| Sbjct 147356 TCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAG 147297 Query 156049 TACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 ||| | | | ||||||||||| || || ||||||||||| ||||| ||||||| | Sbjct 147296 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGA 147237 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||| ||||| ||||||||||| ||| ||| | || || | | || Sbjct 147236 GCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC 147177 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCC 156224 | | || | | || ||||| ||||| | |||| || || || ||||| | Sbjct 147176 GGATGCGGTGGACGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATTGCGCAGGTC 147118 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | || | | ||||||| || ||||| || |||| ||| | || |||| ||| Sbjct 147117 TTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAA 147058 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | || | | | || || ||||||||||| |||||||| | || ||| | || || Sbjct 147057 GACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAAC 146998 Query 156345 TTATTAGACAT 156355 || | ||||| Sbjct 146997 TTGCTCGACAT 146987 >seq1198 Length=63640 Score = 100 bits (110), Expect = 8e-16 Identities = 181/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| || || || ||||||||| | || || || || ||||| || | Sbjct 56822 CTTGACGAGACGGCGTTGGATGTAACCAGTTTCGGCAGTCTTGACTGCAGTATCGATCAA 56763 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701 ||| | | |||| ||||||||||||| || | || | || |||| | || | | Sbjct 56762 ACCCTCTCTACCAGCCATAGCATGGAAAAAGAATTCA-CTGGGCGTAAGACCACGGAGGT 56704 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| | || || || || || |||||||| || | |||| |||||| || || || | Sbjct 56703 ATGAGTTTTCGACAAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 56644 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | ||||||||||| || || ||| |||||||||| | Sbjct 56643 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACGATCTGCTGTCCGACAA 56584 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | ||||||| ||||| || Sbjct 56583 GGGCAGTCATCTGGGAAATGTT 56562 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||||| || | | ||| ||||||||| | || ||||| |||||| | ||||||||| Sbjct 57613 AGAATCTCCTTGAGACGAGGAACACCAAGCGTGACGTT---CTTGGAAGAAACACCAGCG 57557 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| |||| || | || |||| ||||||||||| || || ||||| Sbjct 57556 AAATGGAAAGTGTTCAACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATG 57497 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| || || Sbjct 57496 ACGCCCACCATTTCACCAGG 57477 >seq1180 Length=32876 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || |||||||| || |||||||| || | | Sbjct 18915 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 18856 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || |||||||||||||||| | || ||| | |||||||| ||||| || Sbjct 18855 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATAGTACCCTTCTG 18797 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| || |||||| || ||||| Sbjct 18796 ACCGTGACGCGACGCGAACTTGTCGCCAAT 18767 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||||||||| || |||||||| |||||||| || || Sbjct 19269 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAGACCACCGTCACGT 19210 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | |||||| | ||||| Sbjct 19209 GCACGACCCTCCACTGGCTG 19190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786956297625