Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq501 174 2e-37
seq1129 147 3e-29
seq1200 127 2e-23
seq933 111 2e-18
seq1057 104 3e-16
seq950 102 1e-15
seq277 95.1 1e-13
seq1264 93.3 5e-13
>seq501
Length=177797
Score = 174 bits (192), Expect = 2e-37
Identities = 331/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| |||||||| ||||||||||| |||| ||||||||
Sbjct 147274 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 147215
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||| |||||||| || | ||| | ||||| ||||| | ||| || | ||
Sbjct 147214 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 147155
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| |||||||| || |||||
Sbjct 147154 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 147095
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||||| | |||||||| || || ||||| || || || | || | || ||
Sbjct 147094 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACC 147035
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| || || | || ||||| |||| | |||||| || ||||||
Sbjct 147034 AGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 146975
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||| | || || || ||| | |||||
Sbjct 146974 CTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCGAC 146930
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | |||| | ||| ||||| ||
Sbjct 146929 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGA 146870
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| ||||| || || |||||||||| | ||||||
Sbjct 146869 TCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 146810
Query 1630545 GGCGTCGAG 1630553
| ||| ||
Sbjct 146809 AGAGTCAAG 146801
Score = 98.7 bits (108), Expect = 1e-14
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929
|| || || |||||||| |||| || || || |||||||||| ||| || |||||||
Sbjct 147942 TCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCC 147883
Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989
|| | |||||||||||||||| || || | | ||||||||||| || || ||||||
Sbjct 147882 TCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGG 147823
Query 1627990 ACGATCTCGTGCAG 1628003
|| |||||| ||
Sbjct 147822 GTGACCTCGTGGAG 147809
Score = 98.7 bits (108), Expect = 1e-14
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || ||| ||||| | || || || || ||| |||||| |||| |
Sbjct 148328 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 148269
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
|||| | ||| ||||||||| |||||| || || |||| || |||||| |||| |
Sbjct 148268 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 148209
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512
|||| || |||||||| | |||||||| | || || || | ||| ||||||||||||
Sbjct 148208 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAGAGCGTCCCAGTCC 148150
Query 1627513 CAG 1627515
|||
Sbjct 148149 CAG 148147
Score = 93.3 bits (102), Expect = 5e-13
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227
|||||| ||||| ||||||| | ||| | ||||||||||||| ||||||| | |
Sbjct 147706 GATCTCAGTGCAGAGGTTGGAGCTACGGA-TGGTACCCAGGTTCTTCTGGTTGCTTTTGC 147648
Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287
||||| | || ||||||| ||||||| |||| ||| |||||| | || ||| ||| ||
Sbjct 147647 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 147588
Query 1628288 TGGCCGACCAGATCT 1628302
|||| |||||| ||
Sbjct 147587 TGGCATACCAGAGCT 147573
>seq1129
Length=324241
Score = 147 bits (162), Expect = 3e-29
Identities = 98/109 (90%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||||||||||||||||||||| ||||| |||| |||||| | || ||||||
Sbjct 251006 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 251065
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 251066 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 251114
>seq1200
Length=134541
Score = 127 bits (140), Expect = 2e-23
Identities = 267/392 (68%), Gaps = 12/392 (3%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| |||| | |||| | |||| |||| ||||||||||| ||||| |
Sbjct 126093 GGCGAGTCCCACGACAGGCCCGTCAGTGTCATCGTCGAGGGCGTGCCGCCCGGCATGGCT 126152
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||| ||||||| |||| | || | || ||||| || |||||| | | |
Sbjct 126153 CTCACCGAGTCCGACATTCAGCTGGGGCTGAACCGTCGCCGCCCCGGCCAGACCTCCATC 126212
Query 18220 TCCACGCCGC-GCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278
| ||||| | | ||||| || ||||||||||||||| ||||| ||| || |
Sbjct 126213 ACGACGCCCCCGAAACGAAAGGGACCGCGTCATCATCCAGAGTGGCACCGAGTTTGGGGT 126272
Query 18279 CACGCTCGGCTCGCCCGTCGGCCT-CT-TTGTGGCCAACCGCGACCAGCGGCCCGTCGAC 18336
|| || || | || | ||| | || || || || |||||||| ||| |||
Sbjct 126273 CAT-CTTGGTACCCCGATTGGCATGCTCTTCCGG--AATGAAGACCAGCGTCCCAAGGAC 126329
Query 18337 TAT------TCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATG 18390
|| ||| |||| || | | || || | ||| |||||| || |||||| |
Sbjct 126330 TACGGAAACTCCACCATGGACAGGTTCCCCCGTCTCTCCCACGCCAGCTGGACCTACCTC 126389
Query 18391 GCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTC 18450
| ||||||||| ||||||| | ||||| || ||||| || || ||||| |||||| ||
Sbjct 126390 GAGAAGTACGGCGTCAAGGCCTTCTCGGGTGGCGGCCGCTCTTCCGCCCGTGAGACCATC 126449
Query 18451 ATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|| |||||||||||| ||||||||||
Sbjct 126450 GCCCGTGTCGCCGCCGGCAACCTCGCCGAGAA 126481
>seq933
Length=137956
Score = 111 bits (122), Expect = 2e-18
Identities = 173/244 (71%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| || || |||||||||||||| | || |||||
Sbjct 11539 GCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATA 11480
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | |||||| ||| ||| || |||| ||
Sbjct 11479 TTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAAC- 11421
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || |||||||||||||| ||||| |||||||| ||| ||| || ||||||||| |
Sbjct 11420 CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAA 11362
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || || || | ||| ||| ||||| | ||| |||| |||||| ||||| |
Sbjct 11361 GCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAA 11302
Query 868929 TGAT 868932
||||
Sbjct 11301 TGAT 11298
Score = 95.1 bits (104), Expect = 1e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| || | || ||||||||||||||||||||
Sbjct 11225 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAGGCCGCGCTT 11166
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| || || |||||||| || || ||
Sbjct 11165 CTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGACAGCAGCGAA 11106
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356
| | | | |||| || ||| |||| | ||| | | | |||||||| | |||
Sbjct 11105 GGCAACCAAACGCTGAGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTGAGGGCC 11051
Query 869357 CAGTCGGCCTTTTT 869370
||||||||||| ||
Sbjct 11050 CAGTCGGCCTTCTT 11037
>seq1057
Length=32237
Score = 104 bits (114), Expect = 3e-16
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||
Sbjct 31361 GGCCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTTGCCCACGCCATCATGTCT 31420
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
||||| || |||||||| ||||||||||||
Sbjct 31421 ATCCCTGCGACCAAGGGCTTCGAGATTGGC 31450
Score = 102 bits (112), Expect = 1e-15
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
||||| ||||| |||||||||| |||||| | | || || || |||||||| || ||
Sbjct 30938 CCGCGCCCCTCCCACGCCGACTGGACCTACCTTGAGAAATATGGTATCAAGGCCTCCTCT 30997
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
|| || |||||| |||||||||||| | ||||||||||||||||| || |||
Sbjct 30998 GGAGGCGGCCGGAGCAGCGCCCGCGAGACCATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 31057
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 31058 GAGAAGTGGCT 31068
>seq950
Length=64430
Score = 102 bits (112), Expect = 1e-15
Identities = 251/372 (67%), Gaps = 18/372 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || | || | | | |||||||||||||||||||
Sbjct 50578 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACACCGAGGTTGCCGTCGGTGCCGTTCTTGA 50636
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| |||||| ||||
Sbjct 50637 AGCCGACGGGGAAGGACAGACCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 50696
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867
| || || | ||| || | | | ||| || || | |||| ||| ||
Sbjct 50697 GGGCACCGATGGCACCGACGGAGATGAAGTCGGCGAGGAACTGCGGGG-----AGATGGT 50751
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | ||| ||| | |||| || | ||||| | || ||||| || || |
Sbjct 50752 GTCGAGCATCTCACTGGCGATGGGC--AT-GCCGGCGGTGGTCAGGTCGCGGAAGAGCTG 50808
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 50809 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 50868
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| || || ||||| |||| ||||||||||||| |||||
Sbjct 50869 GAGGCCCTTCCAGCCGACGGTGGTTCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 50928
Query 1727047 AAGCGCGTCGCC 1727058
|| ||||||
Sbjct 50929 GAG---GTCGCC 50937
>seq277
Length=45443
Score = 95.1 bits (104), Expect = 1e-13
Identities = 143/202 (71%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGGCTCGGG 1572447
||| ||||||||| ||||||| || | || || ||| | ||||| || ||||||
Sbjct 3576 GCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACGATCTCGGG 3517
Query 1572448 TTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTG---GACAACGTG 1572504
| || || | || | |||||||| ||| ||||||| ||| ||
Sbjct 3516 GGTGAAGATGCGCTCCACGACGAGCTGGGCGACGCGG---TCGCCCTCAGCGACCTCGAA 3460
Query 1572505 GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGAT 1572564
||||| ||||| |||||||||||| | ||| ||||||||||| |||||||| |||||
Sbjct 3459 GTCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGCGTCGAT 3400
Query 1572565 GACGCCTGCGCCGACGTCGATG 1572586
|||||| ||||| |||||||
Sbjct 3399 GACGCCAGCGCCCGTGTCGATG 3378
>seq1264
Length=384609
Score = 93.3 bits (102), Expect = 5e-13
Identities = 202/300 (67%), Gaps = 2/300 (1%)
Strand=Plus/Minus
Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063
||| | ||||| || || || ||||||| |||| |||| | || |||||
Sbjct 95524 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGCCCAGAAGAAGGTCACGCTGCCC 95465
Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123
| || ||||| ||| | | || || |||||||||||| || | || || | ||||||
Sbjct 95464 CAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCCAG 95405
Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183
|| ||||| || || ||||| | || |||||||||||||||| ||| | || |||
Sbjct 95404 CAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGC 95345
Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTG 1574243
|| ||| | | |||||||| | || ||| || |||||||| || || | ||
Sbjct 95344 AATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATGCC 95285
Query 1574244 CGCCTGGGTGACGCCCAGATACGCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302
|| || ||||| ||| | | ||| || ||| | ||| ||| || ||||||||
Sbjct 95284 CGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGC-AGATTATCGAGGCGGAAAAGGT 95226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107005844890125
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