Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 113 4e-20
seq1539 104 2e-17
>seq1045
Length=66817
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || ||||| ||||| || || || || || | ||
Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||| ||||| || ||||| ||||| | | | |||| || || |||
Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
|| || ||||| || || || ||| ||||| |||| |||| || || ||
Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTGG 49736
>seq1539
Length=122776
Score = 104 bits (114), Expect = 2e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || ||||| || || || | || || | || |
Sbjct 50609 AAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCGACAAT 50668
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || ||||| || ||||| ||||| || ||||| ||||| ||||| |||||||||
Sbjct 50669 GTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTGATCTTT 50728
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || || ||||| |||||| | | | || || || ||||| |||||||||||
Sbjct 50729 GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAATCC 50788
Query 24899 ACACTACACTTGGTG 24913
|| || |||||||||
Sbjct 50789 ACCCTTCACTTGGTG 50803
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || ||||| || || ||| | |
Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||| ||
Sbjct 50882 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 50941
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| |||||||| || ||||| || |||||||| ||| | | |||| || || |||
Sbjct 50942 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 51001
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| || || || ||| | || | || |||| |||||
Sbjct 51002 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGG 51048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449888461455000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |