Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1129 134 2e-25 seq501 131 3e-24 seq1264 118 2e-20 seq933 104 4e-16 seq1198 89.7 8e-12 >seq1129 Length=324241 Score = 134 bits (148), Expect = 2e-25 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||| |||||||| | || |||||||| || |||||| Sbjct 251006 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 251065 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 251066 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 251114 >seq501 Length=177797 Score = 131 bits (144), Expect = 3e-24 Identities = 331/503 (66%), Gaps = 19/503 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| |||||||| ||||||||||| || | |||||||| Sbjct 147274 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 147215 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| |||||||| || | ||| | ||| | ||||| | ||| || | || Sbjct 147214 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 147155 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || ||||| || ||||| Sbjct 147154 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 147095 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777 ||| ||||| | |||||||| | || ||||| || | || | ||| | | | || Sbjct 147094 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGG--GTA 147037 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837 || || |||||||| || || | || ||| | ||| ||||| | |||| Sbjct 147036 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 146977 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || ||| |||||| | |||| | || || || ||| | ||| Sbjct 146976 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCG 146932 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957 || ||||||||||||| |||||||| |||| | | | || | ||| ||||| Sbjct 146931 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAC 146872 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 || | || |||| | ||| ||||| |||| | |||||| |||| | |||| Sbjct 146871 GATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 146812 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTG 2074040 || | ||| || |||||||||| Sbjct 146811 GCAGAGTCAAGCTCCTCCTTGTG 146789 Score = 95.1 bits (104), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || ||| ||||| | || || || || ||| |||||| ||| | Sbjct 148328 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 148269 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 |||| | ||| ||||||||| |||||| || || |||| || |||||| |||| | Sbjct 148268 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 148209 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 ||||||| |||||||| | |||| ||| | | || || ||| ||||||||||||| Sbjct 148208 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCC 148149 Query 2069783 AG 2069784 || Sbjct 148148 AG 148147 >seq1264 Length=384609 Score = 118 bits (130), Expect = 2e-20 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGC 2019198 ||| | ||||| || |||| ||||||| | ||| | | ||||| || |||| Sbjct 95524 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACGCTGC 95467 Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258 | | |||||||| ||| | | || || || ||||||||| || | || || | |||| Sbjct 95466 CCCAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCC 95407 Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318 |||| ||||| || || ||||| | ||| ||||||||||||| || || | |||| Sbjct 95406 AGCAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCT 95347 Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378 |||| ||| | | ||||||| | || || || ||||||||| | || | || Sbjct 95346 GCAATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATG 95287 Query 2019379 CGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGG 2019438 | || ||||| |||| ||| | | | ||| |||| |||||||||| || ||||||| Sbjct 95286 CCCGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATTATCGAGGCGGAAAAGG 95227 Query 2019439 T 2019439 | Sbjct 95226 T 95226 >seq933 Length=137956 Score = 104 bits (114), Expect = 4e-16 Identities = 175/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| || ||| | || ||| || || |||||||||||||| | || Sbjct 11545 ACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGG 11486 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 ||||| |||||| | ||| ||||||| | | ||| ||| ||| || || Sbjct 11485 GAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGA 11426 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || || |||| ||||||||||||||||| ||||||||||| ||| ||| || ||||| Sbjct 11425 GCAAC-CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 11368 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || || || | ||| | | ||||| | ||| |||| |||||| | Sbjct 11367 TGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCAT 11308 Query 794131 CGATGATGAT 794140 ||| ||||| Sbjct 11307 CGACAATGAT 11298 Score = 98.7 bits (108), Expect = 2e-14 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | | | | |||| ||||||| ||||||||| || Sbjct 10961 GTGTCAATGGCGTTGAAGAGGTACGTGCGT-TGGGCCGGCTCCTTGATGTAGGTGTCAAT 10903 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||| ||||| ||||||||||| || || ||||||||||| || ||||| Sbjct 10902 GAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCA 10843 Query 794667 G 794667 | Sbjct 10842 G 10842 >seq1198 Length=63640 Score = 89.7 bits (98), Expect = 8e-12 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 ||||| || ||| |||| |||||||| || | ||| || ||| | | || | | Sbjct 55567 CGCTCGAGTACGGCTGGAAAGTCGAGCGTCATTTAATCACTGGTGACTACATCATCTTCA 55626 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCC 429626 |||| || ||||| || || | || ||| ||| | |||| || | ||| | ||||| Sbjct 55627 ACCGTCAACCGTCTCTTCATAAGGAGTCTATGATGGGTCACAGAGTTCGTGTC-ATGCCT 55685 Query 429627 GG-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGG 429685 ||| || ||||| ||||||||| |||| || | ||||||||||| || ||||| Sbjct 55686 TACTCG-ACTTTCCGTCTCAACCTGTCCGTCACCTCGCCTTACAACGCCGATTTCGACGG 55744 Query 429686 CGACGAGATGAACCTGCACGTGCCCCA 429712 ||||||||||| || ||||| ||||| Sbjct 55745 TGACGAGATGAATCTTCACGTCCCCCA 55771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916073541338375