Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1129 134 2e-25
seq501 131 3e-24
seq1264 118 2e-20
seq933 104 4e-16
seq1198 89.7 8e-12
>seq1129
Length=324241
Score = 134 bits (148), Expect = 2e-25
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||| |||||||| | || |||||||| || ||||||
Sbjct 251006 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 251065
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 251066 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 251114
>seq501
Length=177797
Score = 131 bits (144), Expect = 3e-24
Identities = 331/503 (66%), Gaps = 19/503 (4%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| || || || |||| |||||||| ||||||||||| || | ||||||||
Sbjct 147274 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 147215
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||| |||||||| || | ||| | ||| | ||||| | ||| || | ||
Sbjct 147214 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 147155
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || ||||| || |||||
Sbjct 147154 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 147095
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777
||| ||||| | |||||||| | || ||||| || | || | ||| | | | ||
Sbjct 147094 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGG--GTA 147037
Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837
|| || |||||||| || || | || ||| | ||| ||||| | ||||
Sbjct 147036 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 146977
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| ||| |||||| | |||| | || || || ||| | |||
Sbjct 146976 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCG 146932
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957
|| ||||||||||||| |||||||| |||| | | | || | ||| |||||
Sbjct 146931 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAC 146872
Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017
|| | || |||| | ||| ||||| |||| | |||||| |||| | ||||
Sbjct 146871 GATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 146812
Query 2074018 GCGGCGTCGAGGGCCTCCTTGTG 2074040
|| | ||| || ||||||||||
Sbjct 146811 GCAGAGTCAAGCTCCTCCTTGTG 146789
Score = 95.1 bits (104), Expect = 2e-13
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662
||||||| || ||| ||||| | || || || || ||| |||||| ||| |
Sbjct 148328 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 148269
Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722
|||| | ||| ||||||||| |||||| || || |||| || |||||| |||| |
Sbjct 148268 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 148209
Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782
||||||| |||||||| | |||| ||| | | || || ||| |||||||||||||
Sbjct 148208 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCC 148149
Query 2069783 AG 2069784
||
Sbjct 148148 AG 148147
>seq1264
Length=384609
Score = 118 bits (130), Expect = 2e-20
Identities = 208/301 (69%), Gaps = 4/301 (1%)
Strand=Plus/Minus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGC 2019198
||| | ||||| || |||| ||||||| | ||| | | ||||| || ||||
Sbjct 95524 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACGCTGC 95467
Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258
| | |||||||| ||| | | || || || ||||||||| || | || || | ||||
Sbjct 95466 CCCAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCC 95407
Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318
|||| ||||| || || ||||| | ||| ||||||||||||| || || | ||||
Sbjct 95406 AGCAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCT 95347
Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378
|||| ||| | | ||||||| | || || || ||||||||| | || | ||
Sbjct 95346 GCAATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATG 95287
Query 2019379 CGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGG 2019438
| || ||||| |||| ||| | | | ||| |||| |||||||||| || |||||||
Sbjct 95286 CCCGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATTATCGAGGCGGAAAAGG 95227
Query 2019439 T 2019439
|
Sbjct 95226 T 95226
>seq933
Length=137956
Score = 104 bits (114), Expect = 4e-16
Identities = 175/250 (70%), Gaps = 4/250 (2%)
Strand=Plus/Minus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
||||| ||||| || ||| | || ||| || || |||||||||||||| | ||
Sbjct 11545 ACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGG 11486
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010
||||| |||||| | ||| ||||||| | | ||| ||| ||| || ||
Sbjct 11485 GAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGA 11426
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
|| || |||| ||||||||||||||||| ||||||||||| ||| ||| || |||||
Sbjct 11425 GCAAC-CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 11368
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || || || | ||| | | ||||| | ||| |||| |||||| |
Sbjct 11367 TGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCAT 11308
Query 794131 CGATGATGAT 794140
||| |||||
Sbjct 11307 CGACAATGAT 11298
Score = 98.7 bits (108), Expect = 2e-14
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| || | | | | |||| ||||||| ||||||||| ||
Sbjct 10961 GTGTCAATGGCGTTGAAGAGGTACGTGCGT-TGGGCCGGCTCCTTGATGTAGGTGTCAAT 10903
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||| ||||| ||||||||||| || || ||||||||||| || |||||
Sbjct 10902 GAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCA 10843
Query 794667 G 794667
|
Sbjct 10842 G 10842
>seq1198
Length=63640
Score = 89.7 bits (98), Expect = 8e-12
Identities = 147/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567
||||| || ||| |||| |||||||| || | ||| || ||| | | || | |
Sbjct 55567 CGCTCGAGTACGGCTGGAAAGTCGAGCGTCATTTAATCACTGGTGACTACATCATCTTCA 55626
Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCC 429626
|||| || ||||| || || | || ||| ||| | |||| || | ||| | |||||
Sbjct 55627 ACCGTCAACCGTCTCTTCATAAGGAGTCTATGATGGGTCACAGAGTTCGTGTC-ATGCCT 55685
Query 429627 GG-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGG 429685
||| || ||||| ||||||||| |||| || | ||||||||||| || |||||
Sbjct 55686 TACTCG-ACTTTCCGTCTCAACCTGTCCGTCACCTCGCCTTACAACGCCGATTTCGACGG 55744
Query 429686 CGACGAGATGAACCTGCACGTGCCCCA 429712
||||||||||| || ||||| |||||
Sbjct 55745 TGACGAGATGAATCTTCACGTCCCCCA 55771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916073541338375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |