Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 127 4e-24
>seq1539
Length=122776
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||| || || | ||| || || || || ||||| || || |||||
Sbjct 51277 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCT 51218
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | |||||| || | ||| ||||||||||| || || | || ||||| || ||
Sbjct 51217 CAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGG 51158
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| ||||| ||||| | || ||||| |||||||| || || || ||
Sbjct 51157 GATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAAC 51098
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || ||||| || ||||||||||| || || || |||||
Sbjct 51097 CTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
Score = 113 bits (124), Expect = 9e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| || || ||||| || || || || || || |
Sbjct 50822 TACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCG 50763
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || || || || || ||||||||||| | | ||| ||||| ||||
Sbjct 50762 AGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAG 50703
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || |||||||| | || ||||| || || |||||| | || |
Sbjct 50702 GGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAA 50643
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
| || | ||| || |||||||| || | ||||| ||
Sbjct 50642 CCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 50606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981806758050875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |