Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq501 230 2e-55 seq1045 132 5e-26 seq1539 107 2e-18 seq1103 104 2e-17 >seq501 Length=177797 Score = 230 bits (254), Expect = 2e-55 Identities = 989/1544 (64%), Gaps = 51/1544 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || || ||||||||||| || || || || || | || | |||| || | || Sbjct 148326 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 148267 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||| ||||||||||| ||||| | ||| | || || |||||| ||| || Sbjct 148266 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 148207 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||||| | |||| | | || || | ||||||||| ||||||||||| Sbjct 148206 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 148147 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||||||||| |||||||| | | | ||| Sbjct 148146 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 148087 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557 |||||||||| ||| || || | | || |||| | ||| | | | | || | Sbjct 148086 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA-CCGACATAGTAAGGG 148029 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCTT 148613 | | | ||| || |||||| || | | ||||||| || | || | || | Sbjct 148028 CAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGAC---- 147973 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| | ||||| || || || || || || ||||| ||||| || || | |||||| Sbjct 147972 TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATG 147913 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATG 148733 || ||||| |||||| | ||| || || || ||| ||||||||| || ||| Sbjct 147912 GGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATG 147853 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 147852 ATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 147793 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || |||| || | || ||| | ||||| || || ||||| Sbjct 147792 ACACCCTCGTTGTAGTCAACGA---ATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACA 147736 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 || ||| || || ||| |||||| | |||||| | ||| || ||| || ||| Sbjct 147735 GCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 147676 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 |||| |||||| || ||||| |||| |||| || |||||||| |||||| | || Sbjct 147675 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 147616 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGC 149024 ||| || || || | || | ||| | ||| | | | || ||| Sbjct 147615 TTGCCTGTCTCGGTTTGAGCCTCGAGGATG--GCATACCAGAGCTTTTGGGC---CTTAA 147561 Query 149025 TGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076 || | |||||||| ||| ||||| | ||||| || ||||||| ||| Sbjct 147560 GAGTC-TTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC--CTCGAACTCCT 147504 Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136 | |||||||| ||| | ||||| ||||||| | |||||||| || | ||| | |||| Sbjct 147503 CACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGT 147444 Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196 | | || | |||||| || ||||| || | ||| || || | ||||| || | Sbjct 147443 TCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGG 147384 Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256 | | ||||| ||| ||| ||||| | | | | ||| | || |||| Sbjct 147383 CGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGT 147324 Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGT 149313 |||| ||||| | || | || | || || ||| ||||| ||||||||||||| Sbjct 147323 GCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 147264 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373 || | |||| ||||| || || | ||| || | || || ||| ||||| || | Sbjct 147263 ACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGG 147204 Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432 | | |||| | |||| || || | ||| ||||||| || ||||| || | Sbjct 147203 TGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAG 147144 Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492 || | ||| ||||| |||||| ||| || ||| || |||||||| ||| Sbjct 147143 CCAT-CTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCC 147085 Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAAC 149552 |||||| | || ||||| || ||| || | | || || || ||| Sbjct 147084 TCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAG 147025 Query 149553 ATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCAC 149611 | || || |||||| || || | || || | ||||| | ||| | ||||| || Sbjct 147024 AGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTCTCGATGAC 146966 Query 149612 GCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCG 149671 ||| || | || || || |||||| | ||||| ||||| | ||| ||||| |||| Sbjct 146965 GCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCT 146906 Query 149672 CTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT--AGTGTCTTGTAGCCA 149729 ||| || | ||| ||| || || | ||| || | ||| | |||||| |||| Sbjct 146905 CTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAGGTCTTGAAGCCG 146848 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||| | ||||| ||||||||| ||| | | ||||| | ||| Sbjct 146847 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 146804 >seq1045 Length=66817 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||||||||| || Sbjct 49769 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 49828 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||||||||| |||||||| |||||||| |||||| |||| Sbjct 49829 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 49888 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 49889 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 49948 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 49949 TTCACGAAGATCTGCATG 49966 >seq1539 Length=122776 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| |||||||| ||| | ||| ||| |||||| || Sbjct 50520 AAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACC-GTCCTCAAG 50462 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || |||||||||||||||||||| || |||||||| || Sbjct 50461 CTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAAT 50402 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || || | || ||| || || | |||| ||| ||||| Sbjct 50401 CTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCC 50342 Query 133634 GGT 133636 ||| Sbjct 50341 GGT 50339 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || ||| ||| | || || |||||||| || Sbjct 51018 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCA-TCTTCCAGCTGCTTTCC 50960 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 50959 GGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 50900 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| | | || || || | |||| || || || |||| || Sbjct 50899 CACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 50839 CTTGACGAAGATCTGCAT 50822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || ||||| || | ||| | | | ||||| || Sbjct 50799 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCA-TCCTCAAG 50741 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || | || ||||| || |||||||||||||||||||| || Sbjct 50740 CTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAAT 50681 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | || || | || ||| || |||| |||| ||| ||||| Sbjct 50680 CTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCC 50621 Query 133634 GGTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 50620 AGTAAGGGTCTTGACGA 50604 >seq1103 Length=171845 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | ||||||||||| || |||||||| |||||| Sbjct 93354 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 93295 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | || ||| || || | ||| | | Sbjct 93294 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTAATG 93235 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || || || ||||| || || |||||| Sbjct 93234 GTCTTACCCGTCAGGGTCTTCACGAAA 93208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410980515000