Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq501 230 2e-55
seq1045 132 5e-26
seq1539 107 2e-18
seq1103 104 2e-17
>seq501
Length=177797
Score = 230 bits (254), Expect = 2e-55
Identities = 989/1544 (64%), Gaps = 51/1544 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || || ||||||||||| || || || || || | || | |||| || | ||
Sbjct 148326 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 148267
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || |||| ||||||||||| ||||| | ||| | || || |||||| ||| ||
Sbjct 148266 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 148207
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
||||| |||||||| | |||| | | || || | ||||||||| |||||||||||
Sbjct 148206 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 148147
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| ||| || | || ||||||||||||||||| |||||||| | | | |||
Sbjct 148146 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 148087
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557
|||||||||| ||| || || | | || |||| | ||| | | | | || |
Sbjct 148086 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA-CCGACATAGTAAGGG 148029
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCTT 148613
| | | ||| || |||||| || | | ||||||| || | || | || |
Sbjct 148028 CAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGAC---- 147973
Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673
||| | ||||| || || || || || || ||||| ||||| || || | ||||||
Sbjct 147972 TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATG 147913
Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATG 148733
|| ||||| |||||| | ||| || || || ||| ||||||||| || |||
Sbjct 147912 GGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATG 147853
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
|| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 147852 ATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 147793
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|||| || |||| || | || ||| | ||||| || || |||||
Sbjct 147792 ACACCCTCGTTGTAGTCAACGA---ATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACA 147736
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904
|| ||| || || ||| |||||| | |||||| | ||| || ||| || |||
Sbjct 147735 GCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 147676
Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964
|||| |||||| || ||||| |||| |||| || |||||||| |||||| | ||
Sbjct 147675 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 147616
Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGC 149024
||| || || || | || | ||| | ||| | | | || |||
Sbjct 147615 TTGCCTGTCTCGGTTTGAGCCTCGAGGATG--GCATACCAGAGCTTTTGGGC---CTTAA 147561
Query 149025 TGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076
|| | |||||||| ||| ||||| | ||||| || ||||||| |||
Sbjct 147560 GAGTC-TTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC--CTCGAACTCCT 147504
Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136
| |||||||| ||| | ||||| ||||||| | |||||||| || | ||| | ||||
Sbjct 147503 CACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGT 147444
Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196
| | || | |||||| || ||||| || | ||| || || | ||||| || |
Sbjct 147443 TCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGG 147384
Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256
| | ||||| ||| ||| ||||| | | | | ||| | || ||||
Sbjct 147383 CGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGT 147324
Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGT 149313
|||| ||||| | || | || | || || ||| ||||| |||||||||||||
Sbjct 147323 GCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 147264
Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373
|| | |||| ||||| || || | ||| || | || || ||| ||||| || |
Sbjct 147263 ACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGG 147204
Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432
| | |||| | |||| || || | ||| ||||||| || ||||| || |
Sbjct 147203 TGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAG 147144
Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492
|| | ||| ||||| |||||| ||| || ||| || |||||||| |||
Sbjct 147143 CCAT-CTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCC 147085
Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAAC 149552
|||||| | || ||||| || ||| || | | || || || |||
Sbjct 147084 TCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAG 147025
Query 149553 ATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCAC 149611
| || || |||||| || || | || || | ||||| | ||| | ||||| ||
Sbjct 147024 AGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTCTCGATGAC 146966
Query 149612 GCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCG 149671
||| || | || || || |||||| | ||||| ||||| | ||| ||||| ||||
Sbjct 146965 GCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCT 146906
Query 149672 CTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT--AGTGTCTTGTAGCCA 149729
||| || | ||| ||| || || | ||| || | ||| | |||||| ||||
Sbjct 146905 CTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAGGTCTTGAAGCCG 146848
Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
||||| | ||||| ||||||||| ||| | | ||||| | |||
Sbjct 146847 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 146804
>seq1045
Length=66817
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| ||||||||||||||| ||
Sbjct 49769 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 49828
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || |||||||||||||| |||||||| |||||||| |||||| ||||
Sbjct 49829 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 49888
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 49889 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 49948
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 49949 TTCACGAAGATCTGCATG 49966
>seq1539
Length=122776
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| |||||||| ||| | ||| ||| |||||| ||
Sbjct 50520 AAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACC-GTCCTCAAG 50462
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | || || |||||||||||||||||||| || |||||||| ||
Sbjct 50461 CTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAAT 50402
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | || | || || | || ||| || || | |||| ||| |||||
Sbjct 50401 CTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCC 50342
Query 133634 GGT 133636
|||
Sbjct 50341 GGT 50339
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || || ||| ||| | || || |||||||| ||
Sbjct 51018 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCA-TCTTCCAGCTGCTTTCC 50960
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 50959 GGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 50900
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | |||||| | | || || || | |||| || || || |||| ||
Sbjct 50899 CACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 50839 CTTGACGAAGATCTGCAT 50822
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||||| || || || || ||||| || | ||| | | | ||||| ||
Sbjct 50799 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCA-TCCTCAAG 50741
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || | || | || ||||| || |||||||||||||||||||| ||
Sbjct 50740 CTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAAT 50681
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | || || | || ||| || |||| |||| ||| |||||
Sbjct 50680 CTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCC 50621
Query 133634 GGTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 50620 AGTAAGGGTCTTGACGA 50604
>seq1103
Length=171845
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | ||||||||||| || |||||||| ||||||
Sbjct 93354 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 93295
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||| | || ||| || || | ||| | |
Sbjct 93294 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTAATG 93235
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| || || ||||| || || ||||||
Sbjct 93234 GTCTTACCCGTCAGGGTCTTCACGAAA 93208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483410980515000
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