Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 111 1e-19
seq1539 100 2e-16
>seq1045
Length=66817
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || ||| | ||||| || |||||| ||| || || |||||||| ||||
Sbjct 49737 CACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 49796
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| |||| || | || |||||||| || |||| |||||||| || | |
Sbjct 49797 ACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGG 49856
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || || || | ||| ||| | ||||||| || |||
Sbjct 49857 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCC 49915
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || ||||| || | || || || |||||||||||
Sbjct 49916 ACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 49965
>seq1539
Length=122776
Score = 100 bits (110), Expect = 2e-16
Identities = 140/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||||||| || ||||| |||| |||||||| ||||| |||||
Sbjct 51241 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAA 51182
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||| | |||||||||||| | || | || || ||||| || ||| | | |||||
Sbjct 51181 AATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTC-GACTTAACAT 51123
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||| || || || || | ||| || || || || || ||||| || |
Sbjct 51122 TGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGA 51063
Query 33737 CAAAGATCTGCATA 33750
| ||||| ||||||
Sbjct 51062 CGAAGATTTGCATA 51049
Score = 96.9 bits (106), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || |||||||| || || | ||||| | || |||| ||
Sbjct 51024 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGC 50965
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|||||||| ||||||||||||||||| || | || | || || ||||| ||| ||
Sbjct 50964 TTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTG 50905
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
||| || | ||| | ||||| |||||| || || | |||||| || || || ||
Sbjct 50904 GACTTC-ACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGT 50846
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
|| || || || ||||||||||||
Sbjct 50845 CAATGTCTTGACGAAGATCTGCATA 50821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328697490120000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |