Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 111 4e-19
seq1045 84.2 5e-11
>seq1539
Length=122776
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || ||||| |||| || ||| || |||
Sbjct 50825 CAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCGGAC 50884
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || ||| || ||| ||
Sbjct 50885 ACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 50944
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | || ||||||||||||||| |||||||||| | |||||| | || |||||| |
Sbjct 50945 CGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAACATT 51004
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||||||||||||
Sbjct 51005 CAGAAGGAGTCAACTCTTCACCTTGT 51030
Score = 95.1 bits (104), Expect = 3e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|||||||||||||| ||||| ||||| | || ||||||| |||||| | |||||||||
Sbjct 51030 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 50971
Query 204824 AGCTGCTTTCCGGCGAAGAT 204843
||||||||||||||||| ||
Sbjct 50970 AGCTGCTTTCCGGCGAAAAT 50951
>seq1045
Length=66817
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || ||||| | || ||||| || ||||| ||||
Sbjct 49950 AAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAAT 49891
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || || || ||| || | || ||||||
Sbjct 49890 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTC 49831
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|||||||||||| | || || || | || || |||| |||||| ||||||| |||||
Sbjct 49830 GCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 49771
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 49770 ACTCTCCACCTGGT 49757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181796194121625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |