Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq501 140 3e-28
>seq501
Length=177797
Score = 140 bits (154), Expect = 3e-28
Identities = 729/1143 (64%), Gaps = 39/1143 (3%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| |||||||||||||| || || ||||| | | || | ||| ||| | |||
Sbjct 148326 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 148267
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || ||||||| ||||| || || || | ||| | || || |||||| ||| ||
Sbjct 148266 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 148207
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | ||||| | ||| | ||||||| || | |||||||||
Sbjct 148206 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 148147
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| ||||||| | || |||||||||||||||||||| | || || | ||
Sbjct 148146 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 148087
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA-TTCACAGCTTGCCTCG--AGC 147189
|| || |||| |||| || || || ||||| | ||| | | | | ||
Sbjct 148086 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCG---ACATAGTAAGG 148030
Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249
|| ||| ||| || || ||| || | ||||| ||| | ||||| ||||
Sbjct 148029 GCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCG 147970
Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309
| ||||| || ||| || |||||||| || | |||||| | ||||| || || ||
Sbjct 147969 AAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGG 147910
Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAA 147367
|| || |||||| | | || || || | || ||||||||| |||||| |
Sbjct 147909 CGGTGGCGCATGTTGCT--GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGA 147852
Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425
| |||||||||| || || ||||| | || | | ||| |||| ||| || ||
Sbjct 147851 TTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGA 147792
Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484
| | ||| | | || ||| || | || ||| | || ||||| || || || |
Sbjct 147791 CACCCTCGTTGTAGTCA---ACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAG 147735
Query 147485 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543
| ||| || |||| || ||||| | ||| || | ||| |||||| || |||
Sbjct 147734 CGACCTCGTCAGGCG-CGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 147676
Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
|||| || | ||| |||||||| || ||| || || ||| |||||||| | ||
Sbjct 147675 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 147616
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
||| |||||| ||| | || | ||| | ||| || | || || |
Sbjct 147615 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACC---AGAGCTTTTGGGCCTTAAGA 147559
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| |||| | ||||||| |||||| || ||| ||||| || |||
Sbjct 147558 GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCG 147499
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG-- 147778
||||| |||||||| || || |||| || || ||||| || | ||| ||| ||||
Sbjct 147498 TAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCA---GTC-TCCGTT 147443
Query 147779 CGTT--AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836
| || || | ||| || ||||| || | ||| || || | ||| || || ||
Sbjct 147442 CTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGC 147383
Query 147837 TTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAAT-TAAGCACGCTATAGATGTCGGCG 147894
| || || | ||||| | | | || || ||| | | | ||| ||||||
Sbjct 147382 GCGGACCTCTTCCTTG-CCATGGTTCTTCCGCAGATCTAAAAAGTCGA-AGACATCGGCG 147325
Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951
||||| || || | |||| ||| | ||||| |||| || || |||||||||||
Sbjct 147324 TGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACG 147265
Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011
| || | |||| ||||| || || | |||||| | | ||| | | ||||| |||
Sbjct 147264 TACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTG 147205
Query 148012 GTG 148014
|||
Sbjct 147204 GTG 147202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476601518835000
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