Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq501 140 3e-28 >seq501 Length=177797 Score = 140 bits (154), Expect = 3e-28 Identities = 729/1143 (64%), Gaps = 39/1143 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| |||||||||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 148326 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 148267 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || ||||||| ||||| || || || | ||| | || || |||||| ||| || Sbjct 148266 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 148207 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | ||| | ||||||| || | ||||||||| Sbjct 148206 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 148147 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | ||||||| | || |||||||||||||||||||| | || || | || Sbjct 148146 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 148087 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA-TTCACAGCTTGCCTCG--AGC 147189 || || |||| |||| || || || ||||| | ||| | | | | || Sbjct 148086 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCG---ACATAGTAAGG 148030 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || ||| ||| || || ||| || | ||||| ||| | ||||| |||| Sbjct 148029 GCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCG 147970 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 | ||||| || ||| || |||||||| || | |||||| | ||||| || || || Sbjct 147969 AAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGG 147910 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAA 147367 || || |||||| | | || || || | || ||||||||| |||||| | Sbjct 147909 CGGTGGCGCATGTTGCT--GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGA 147852 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425 | |||||||||| || || ||||| | || | | ||| |||| ||| || || Sbjct 147851 TTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGA 147792 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | | ||| | | || ||| || | || ||| | || ||||| || || || | Sbjct 147791 CACCCTCGTTGTAGTCA---ACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAG 147735 Query 147485 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 | ||| || |||| || ||||| | ||| || | ||| |||||| || ||| Sbjct 147734 CGACCTCGTCAGGCG-CGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 147676 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 |||| || | ||| |||||||| || ||| || || ||| |||||||| | || Sbjct 147675 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 147616 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 ||| |||||| ||| | || | ||| | ||| || | || || | Sbjct 147615 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACC---AGAGCTTTTGGGCCTTAAGA 147559 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| |||| | ||||||| |||||| || ||| ||||| || ||| Sbjct 147558 GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCG 147499 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG-- 147778 ||||| |||||||| || || |||| || || ||||| || | ||| ||| |||| Sbjct 147498 TAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCA---GTC-TCCGTT 147443 Query 147779 CGTT--AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836 | || || | ||| || ||||| || | ||| || || | ||| || || || Sbjct 147442 CTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGC 147383 Query 147837 TTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAAT-TAAGCACGCTATAGATGTCGGCG 147894 | || || | ||||| | | | || || ||| | | | ||| |||||| Sbjct 147382 GCGGACCTCTTCCTTG-CCATGGTTCTTCCGCAGATCTAAAAAGTCGA-AGACATCGGCG 147325 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || || | |||| ||| | ||||| |||| || || ||||||||||| Sbjct 147324 TGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACG 147265 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | || | |||| ||||| || || | |||||| | | ||| | | ||||| ||| Sbjct 147264 TACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTG 147205 Query 148012 GTG 148014 ||| Sbjct 147204 GTG 147202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601518835000