Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq501 154 2e-31
seq933 134 2e-25
seq1264 95.1 2e-13
seq950 86.0 9e-11
seq277 86.0 9e-11
>seq501
Length=177797
Score = 154 bits (170), Expect = 2e-31
Identities = 344/507 (68%), Gaps = 27/507 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| |||||||| | ||| ||| ||||| |||| |||||
Sbjct 146789 CACAAGGAGGAGCTTGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 146848
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797
|| | ||||||| | || ||||| | ||| || || | |||| || |
Sbjct 146849 GGCTTCAAGACCTTGGAGAGATCGTACCTC-CTGAAGCTTGACGGCAAGATTGCCG---A 146904
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
| | |||||| | ||| ||||||||||||| ||||| | |||| | ||
Sbjct 146905 GAGACCCCAGCACATGATCATGCGTGTCGCTGTTGGCA--TCTGGGGT----------GA 146952
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916
||| | | |||| ||| ||| |||||| | |||||| |||| ||| ||||| |
Sbjct 146953 CAACG---TTGAGCGCGTCATCGAGACCTACAACCTGATGTCG-AGCAAGTTCTTCAC-T 147007
Query 259917 CA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975
|| || | || || ||||| || || || || || | | ||| || || |||||
Sbjct 147008 CACGCCTCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTC 147067
Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035
|| | |||||||| | || || |||||||| || || ||||| |||||| |||||
Sbjct 147068 CTTGTCGACATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACCTGCGCA 147127
Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095
| ||||||||| ||| || ||||| ||| | || ||| | ||||| | |||
Sbjct 147128 ATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGC 147187
Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155
| ||| | || |||||||| ||| |||||||| | || |||||||| || || |||
Sbjct 147188 TCTTACATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTT 147247
Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182
|| |||| || || ||||||||||||
Sbjct 147248 AATAACACTGCTCGGTACGTCGACCAG 147274
Score = 102 bits (112), Expect = 1e-15
Identities = 355/546 (65%), Gaps = 26/546 (5%)
Strand=Plus/Plus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGTTGC 262936
||||||||||||||| ||| || | | | || | ||||| || | |||||||| |||
Sbjct 148147 CTGGGACTGGGACGCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 148205
Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996
|||| |||| |||||| || |||| || || |||||| ||||||||| ||| ||||
Sbjct 148206 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCG 148265
Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056
|| | ||| |||||| ||| || || || || | ||||| ||| || ||||
Sbjct 148266 AGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCA 148325
Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGA--CTTTCGCG- 263113
||| || | ||| | | || | || ||||| | |||| || | |
Sbjct 148326 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTG---GTCCGATGCTATGAAGA 148382
Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173
|||| ||||||| | | || || | ||| | | | || | || |||
Sbjct 148383 ACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAAC------ATTCCTACCG 148436
Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATA 263230
| | ||||| | | |||||| || ||||| | || | || ||| ||| | |
Sbjct 148437 AGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCG---TACCGTTGTACAGA 148493
Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290
|||| |||||||| | ||| |||||||| ||||| || ||| | || | |
Sbjct 148494 TGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGG 148553
Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347
||||||| || | || ||||| |||||| | || ||| | ||| || |
Sbjct 148554 ACCCGACTATGGGCAAG---ATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGA 148610
Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407
|||| ||||||||||| |||||||| | | | ||||| ||||||| ||||||||||
Sbjct 148611 AGACGGGCATGTACTACCTGCGCACACAGGCTGCTGCTGCGCCCATTCAGTTCACCGTCG 148670
Query 263408 ATCAGG 263413
| ||||
Sbjct 148671 ACCAGG 148676
>seq933
Length=137956
Score = 134 bits (148), Expect = 2e-25
Identities = 235/336 (70%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || |
Sbjct 10629 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATC 10687
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGC---GACGACGAGCGCCATTTCATCA 1455891
| ||| | | ||||| || | || || ||| | ||||||
Sbjct 10688 TGTCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCT 10747
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||| | |||||||| || |||||| ||| |||||||| |||||| ||| ||
Sbjct 10748 CGCACATTCTCGCCTTCTT-CGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAG 10806
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| ||| |||| ||||| || | || ||||| ||||||||
Sbjct 10807 CGCTTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATG 10866
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || || |||||||| || || ||||||||| ||||||| |||
Sbjct 10867 ATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCG 10926
Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
| | | | | || ||||||| |||||| |||||
Sbjct 10927 GCCCA-ACGCACGTACCTCTTCAACGCCATTGACAC 10961
Score = 95.1 bits (104), Expect = 2e-13
Identities = 116/156 (74%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| | |||||||| | | | ||| | |||| ||| || |
Sbjct 11037 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCTCA 11092
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| | || | ||| || || |||||||| || || ||| || ||| | ||||
Sbjct 11093 GCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCAT 11152
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| ||||||||||||||||||||||||||||||||
Sbjct 11153 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 11188
Score = 91.5 bits (100), Expect = 2e-12
Identities = 174/251 (69%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| ||||| |||||| |||| ||| | ||||| | | ||| | || || ||
Sbjct 11298 ATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCC 11357
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||| ||| | || ||| ||||||||||| || |||||||||||||
Sbjct 11358 CTGCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGACCGCC 11415
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| | | || || ||| || | ||| ||| | | ||||||| ||| | |||
Sbjct 11416 TCTTGGTTGCTCTTGGCAACG-ACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATG 11474
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || || || | || ||| |||
Sbjct 11475 GAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAGCGTGTTGCCGACTACCAA 11534
Query 1456762 AAGGCCGGCGT 1456772
|||||||||||
Sbjct 11535 AAGGCCGGCGT 11545
>seq1264
Length=384609
Score = 95.1 bits (104), Expect = 2e-13
Identities = 168/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869
|||||||| || ||| ||||| |||| || | | | || |||||||||| ||
Sbjct 95226 ACCTTTTCCGCCTCGATAATCTGCAGCAGCCGCTTGACCACCTGCTCGTCAGTGAGCCGG 95285
Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929
|| | || |||||||| || || ||||| | |||||||| | | ||| |||
Sbjct 95286 GCATACCGGAGGATGGCGCATCGCGATTGCAGCGGCTCGATGATCTTGTTGGACTGATTG 95345
Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989
||||| | ||| || |||||||| |||| | | ||||| || || ||||| ||
Sbjct 95346 CAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATTGTTCGGCGAAGGGCTTGC 95405
Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049
||||| | | || | || |||||||||||| || || | | ||| ||||| || ||
Sbjct 95406 TGGGCACCTGATGTCATGCTGTCGGCCTCGTCAAGAATCACAAGCTTATGGCGGCCCTGG 95465
Query 333050 GGCAG 333054
|||||
Sbjct 95466 GGCAG 95470
>seq950
Length=64430
Score = 86.0 bits (94), Expect = 9e-11
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|| ||| ||||||| |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 50712 GGTGCCATCGGTGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGTCTG 50653
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | || | | ||| |||| ||
Sbjct 50652 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGTGTC-GCCATCGACGC 50594
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 50593 CATCGGCGCCGCCGCC--GCCAAGCACC 50568
>seq277
Length=45443
Score = 86.0 bits (94), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| ||||| |||||| | || | |||||| ||||||||||| ||| | ||
Sbjct 3378 CATCGACACGGGCGCTGGCGTCATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCT 3437
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| ||||| |||||| | |||| |||| ||| |||||||| | |
Sbjct 3438 CTTCAACCACGCCGACACCGACTTCGAGGTCGCTGAGGGCGACCGCGTCGCCCAGCTCGT 3497
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
||| || || | |||||| ||| ||||| | || || || | || |||
Sbjct 3498 CGTGGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 3557
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| |||||||||| ||
Sbjct 3558 CGGCGCCGGCGGCTTCGG 3575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177654465763250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |