Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq501 154 2e-31 seq933 134 2e-25 seq1264 95.1 2e-13 seq950 86.0 9e-11 seq277 86.0 9e-11 >seq501 Length=177797 Score = 154 bits (170), Expect = 2e-31 Identities = 344/507 (68%), Gaps = 27/507 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| |||||||| | ||| ||| ||||| |||| ||||| Sbjct 146789 CACAAGGAGGAGCTTGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 146848 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797 || | ||||||| | || ||||| | ||| || || | |||| || | Sbjct 146849 GGCTTCAAGACCTTGGAGAGATCGTACCTC-CTGAAGCTTGACGGCAAGATTGCCG---A 146904 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 | | |||||| | ||| ||||||||||||| ||||| | |||| | || Sbjct 146905 GAGACCCCAGCACATGATCATGCGTGTCGCTGTTGGCA--TCTGGGGT----------GA 146952 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916 ||| | | |||| ||| ||| |||||| | |||||| |||| ||| ||||| | Sbjct 146953 CAACG---TTGAGCGCGTCATCGAGACCTACAACCTGATGTCG-AGCAAGTTCTTCAC-T 147007 Query 259917 CA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975 || || | || || ||||| || || || || || | | ||| || || ||||| Sbjct 147008 CACGCCTCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTC 147067 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | |||||||| | || || |||||||| || || ||||| |||||| ||||| Sbjct 147068 CTTGTCGACATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACCTGCGCA 147127 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | ||||||||| ||| || ||||| ||| | || ||| | ||||| | ||| Sbjct 147128 ATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGC 147187 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 | ||| | || |||||||| ||| |||||||| | || |||||||| || || ||| Sbjct 147188 TCTTACATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTT 147247 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 || |||| || || |||||||||||| Sbjct 147248 AATAACACTGCTCGGTACGTCGACCAG 147274 Score = 102 bits (112), Expect = 1e-15 Identities = 355/546 (65%), Gaps = 26/546 (5%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGTTGC 262936 ||||||||||||||| ||| || | | | || | ||||| || | |||||||| ||| Sbjct 148147 CTGGGACTGGGACGCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 148205 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 |||| |||| |||||| || |||| || || |||||| ||||||||| ||| |||| Sbjct 148206 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCG 148265 Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056 || | ||| |||||| ||| || || || || | ||||| ||| || |||| Sbjct 148266 AGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCA 148325 Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGA--CTTTCGCG- 263113 ||| || | ||| | | || | || ||||| | |||| || | | Sbjct 148326 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTG---GTCCGATGCTATGAAGA 148382 Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173 |||| ||||||| | | || || | ||| | | | || | || ||| Sbjct 148383 ACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAAC------ATTCCTACCG 148436 Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATA 263230 | | ||||| | | |||||| || ||||| | || | || ||| ||| | | Sbjct 148437 AGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCG---TACCGTTGTACAGA 148493 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| |||||||| | ||| |||||||| ||||| || ||| | || | | Sbjct 148494 TGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGG 148553 Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 ||||||| || | || ||||| |||||| | || ||| | ||| || | Sbjct 148554 ACCCGACTATGGGCAAG---ATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGA 148610 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| |||||||| | | | ||||| ||||||| |||||||||| Sbjct 148611 AGACGGGCATGTACTACCTGCGCACACAGGCTGCTGCTGCGCCCATTCAGTTCACCGTCG 148670 Query 263408 ATCAGG 263413 | |||| Sbjct 148671 ACCAGG 148676 >seq933 Length=137956 Score = 134 bits (148), Expect = 2e-25 Identities = 235/336 (70%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || | Sbjct 10629 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATC 10687 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGC---GACGACGAGCGCCATTTCATCA 1455891 | ||| | | ||||| || | || || ||| | |||||| Sbjct 10688 TGTCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCT 10747 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||| | |||||||| || |||||| ||| |||||||| |||||| ||| || Sbjct 10748 CGCACATTCTCGCCTTCTT-CGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAG 10806 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| ||| |||| ||||| || | || ||||| |||||||| Sbjct 10807 CGCTTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATG 10866 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || |||||||| || || ||||||||| ||||||| ||| Sbjct 10867 ATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCG 10926 Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 | | | | | || ||||||| |||||| ||||| Sbjct 10927 GCCCA-ACGCACGTACCTCTTCAACGCCATTGACAC 10961 Score = 95.1 bits (104), Expect = 2e-13 Identities = 116/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| | |||||||| | | | ||| | |||| ||| || | Sbjct 11037 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCTCA 11092 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| | || | ||| || || |||||||| || || ||| || ||| | |||| Sbjct 11093 GCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCAT 11152 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||||||||||||||||| Sbjct 11153 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 11188 Score = 91.5 bits (100), Expect = 2e-12 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| ||||| |||||| |||| ||| | ||||| | | ||| | || || || Sbjct 11298 ATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCC 11357 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| | || ||| ||||||||||| || ||||||||||||| Sbjct 11358 CTGCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGACCGCC 11415 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | | | || || ||| || | ||| ||| | | ||||||| ||| | ||| Sbjct 11416 TCTTGGTTGCTCTTGGCAACG-ACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATG 11474 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || || || | || ||| ||| Sbjct 11475 GAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAGCGTGTTGCCGACTACCAA 11534 Query 1456762 AAGGCCGGCGT 1456772 ||||||||||| Sbjct 11535 AAGGCCGGCGT 11545 >seq1264 Length=384609 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 |||||||| || ||| ||||| |||| || | | | || |||||||||| || Sbjct 95226 ACCTTTTCCGCCTCGATAATCTGCAGCAGCCGCTTGACCACCTGCTCGTCAGTGAGCCGG 95285 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 || | || |||||||| || || ||||| | |||||||| | | ||| ||| Sbjct 95286 GCATACCGGAGGATGGCGCATCGCGATTGCAGCGGCTCGATGATCTTGTTGGACTGATTG 95345 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 ||||| | ||| || |||||||| |||| | | ||||| || || ||||| || Sbjct 95346 CAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATTGTTCGGCGAAGGGCTTGC 95405 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 ||||| | | || | || |||||||||||| || || | | ||| ||||| || || Sbjct 95406 TGGGCACCTGATGTCATGCTGTCGGCCTCGTCAAGAATCACAAGCTTATGGCGGCCCTGG 95465 Query 333050 GGCAG 333054 ||||| Sbjct 95466 GGCAG 95470 >seq950 Length=64430 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 || ||| ||||||| |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 50712 GGTGCCATCGGTGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGTCTG 50653 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | || | | ||| |||| || Sbjct 50652 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGTGTC-GCCATCGACGC 50594 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 50593 CATCGGCGCCGCCGCC--GCCAAGCACC 50568 >seq277 Length=45443 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| ||||| |||||| | || | |||||| ||||||||||| ||| | || Sbjct 3378 CATCGACACGGGCGCTGGCGTCATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCT 3437 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| ||||| |||||| | |||| |||| ||| |||||||| | | Sbjct 3438 CTTCAACCACGCCGACACCGACTTCGAGGTCGCTGAGGGCGACCGCGTCGCCCAGCTCGT 3497 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 ||| || || | |||||| ||| ||||| | || || || | || ||| Sbjct 3498 CGTGGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 3557 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| |||||||||| || Sbjct 3558 CGGCGCCGGCGGCTTCGG 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177654465763250