Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq824 86.0 5e-12
>seq824
Length=205674
Score = 86.0 bits (94), Expect = 5e-12
Identities = 189/282 (67%), Gaps = 11/282 (4%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || ||||||||| || | || || | || |||||||| ||||| ||
Sbjct 198903 CCCAAGATTATCAACGGTCCTGAAGTCCTTAACAAGTTCGTCGGTCAATCCGAAGAGAAC 198844
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| |||| || || || || |||| | | || | |||| | | | |||
Sbjct 198843 ATCCGAAAGATGTTCGCCGATGCAGA-GAAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 198785
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT----- 19602
| | || || || || | || || ||||| || |||| ||||| |||||||||
Sbjct 198784 TCTTCATATCATCATCTTTGACGAGTTGGATGCTGTCTGCAAGCAGAGAGGTTCTGGTGC 198725
Query 19603 ----GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
|||| | |||||| ||||| ||||||||| || || || | || | || ||
Sbjct 198724 TGGCGGTGGCACTGGAGTTGGTGACAGTGTTGTCAACCAGCTGCTCACCAAGCTCGATGG 198665
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700
|||| |||| || || || || | |||| || ||||| ||
Sbjct 198664 TGTTGACCAGCTCAACAACATCCTGCTTATCGGTATGACCAA 198623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397448128508125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |