Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq824 86.0 5e-12 >seq824 Length=205674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 189/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || ||||||||| || | || || | || |||||||| ||||| || Sbjct 198903 CCCAAGATTATCAACGGTCCTGAAGTCCTTAACAAGTTCGTCGGTCAATCCGAAGAGAAC 198844 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| |||| || || || || |||| | | || | |||| | | | ||| Sbjct 198843 ATCCGAAAGATGTTCGCCGATGCAGA-GAAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 198785 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT----- 19602 | | || || || || | || || ||||| || |||| ||||| ||||||||| Sbjct 198784 TCTTCATATCATCATCTTTGACGAGTTGGATGCTGTCTGCAAGCAGAGAGGTTCTGGTGC 198725 Query 19603 ----GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| | |||||| ||||| ||||||||| || || || | || | || || Sbjct 198724 TGGCGGTGGCACTGGAGTTGGTGACAGTGTTGTCAACCAGCTGCTCACCAAGCTCGATGG 198665 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||| |||| || || || || | |||| || ||||| || Sbjct 198664 TGTTGACCAGCTCAACAACATCCTGCTTATCGGTATGACCAA 198623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448128508125