Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq501 232 8e-56 seq933 127 3e-24 >seq501 Length=177797 Score = 232 bits (256), Expect = 8e-56 Identities = 1159/1832 (63%), Gaps = 43/1832 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 148664 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 148605 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 148604 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 148545 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | || || || ||||||||| || || || || ||||| | | Sbjct 148544 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 148488 Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 || | | || | |||||||| |||||| |||| | ||| | || || | Sbjct 148487 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 148428 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 118098 | | ||| || ||||| || ||| || | | |||| | | ||||||| | | Sbjct 148427 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 148371 Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 118158 ||||| ||||| || | ||| |||| || ||| ||||| || ||||| Sbjct 148370 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACT 148311 Query 118159 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218 | || || ||| || | | || || |||| ||||| ||||| ||||||||||||| Sbjct 148310 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 148251 Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | |||||||| || | ||| ||| || |||||||| || | ||| || ||| |||| Sbjct 148250 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 148191 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 118338 ||| | | | | || | ||||| |||||||||||||| || | | || Sbjct 148190 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 148131 Query 118339 CCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 118398 | | |||||| || ||||||| || || || || | || || ||||| | |||| | Sbjct 148130 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 148071 Query 118399 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 118456 | || ||||| ||| ||||| | | | | | | ||||| || || || ||||| Sbjct 148070 AGGGACCCTCCTCCTTAGCCAACT--GCACCGACATAGTAAGGGCAGCATGGTAGATTGT 148013 Query 118457 TTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA 118516 || || || || | | || || || || || | | ||| Sbjct 148012 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 147953 Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 147952 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 147893 Query 118577 CTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 118636 || || || || || || || || ||| || | || || || || Sbjct 147892 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 147833 Query 118637 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 118696 |||||||| |||| || || ||||| | | | || | | | ||| | | | | Sbjct 147832 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 147776 Query 118697 AT---ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 | | | || | ||| | || ||||| |||||||||| | ||| || | | Sbjct 147775 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 147716 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| || || || ||||| | ||| || || ||||| |||| |||||| || || Sbjct 147715 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTT 147656 Query 118814 TGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 | |||| | | | ||||||||||| |||||| | || | || ||||| ||||| | Sbjct 147655 -GCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 147597 Query 118873 ACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC---AGTGGCGTTGG---CTCGCC 118926 || ||| || || | ||||| || ||| | || | | | | || ||| Sbjct 147596 CCTCGAGGATGGCATACCAGA-----GCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCC 147542 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 | ||| |||||||| ||| | ||| || ||||| ||||| | || | || | Sbjct 147541 CATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 147483 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 | || || || ||||| | |||| ||| | || || || || | |||||||| Sbjct 147482 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 147423 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106 |||| || |||||||| || || ||| || || || ||| | ||||| | || | Sbjct 147422 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 147363 Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166 | || |||| || |||||||| | || ||| |||||||| || || || || | | Sbjct 147362 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 147303 Query 119167 CGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223 | | | || ||| ||| |||||| || |||| |||||| ||||| | Sbjct 147302 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 147243 Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT 119283 |||| ||||| |||| |||||| | ||| |||||| || || ||| ||| Sbjct 147242 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 147183 Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343 | || | || ||||| || | |||||| || || ||| ||| ||||| |||| Sbjct 147182 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 147123 Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403 | | |||| || |||| || || ||||| ||||| | || | ||| ||||||| Sbjct 147122 AGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGC 147063 Query 119404 AGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463 | |||| || | ||| ||||||||||||||||| || || | ||||| ||| Sbjct 147062 AAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGA 147003 Query 119464 ACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 | | |||| |||||| || ||||||||| | |||| || || || || Sbjct 147002 --AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCA 146945 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 || || | | ||| ||||| | ||||| |||||| | || | | || || || Sbjct 146944 GATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 146885 Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 | || ||||||| ||||||||||||||| Sbjct 146884 CTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 146853 >seq933 Length=137956 Score = 127 bits (140), Expect = 3e-24 Identities = 333/501 (66%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||| || |||||||| ||||| || ||| | ||||||||||||| Sbjct 11530 TAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 11471 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || ||| || | | |||| | ||| || Sbjct 11470 AAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAGGCG 11412 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| | ||||||||| || | ||| || Sbjct 11411 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 11352 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || ||| | |||| ||| |||||| | || || || | |||| | | Sbjct 11351 AGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTCCTC 11292 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || || | ||| || | | ||| | | | | ||| || ||| || || Sbjct 11291 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGCGAAGTC 11235 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 11234 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAG 11175 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || | ||| |||||| || ||||| || Sbjct 11174 GCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGAC 11115 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 | ||||| |||| | ||||| ||| ||||| |||||| ||| || |||||| Sbjct 11114 AGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 11058 Query 130201 CATCGCCCACTGCGCCTTTTT 130221 | ||||| | ||||| || Sbjct 11057 GAGGGCCCAGTCGGCCTTCTT 11037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422638035000