Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq501 232 8e-56
seq933 127 3e-24
>seq501
Length=177797
Score = 232 bits (256), Expect = 8e-56
Identities = 1159/1832 (63%), Gaps = 43/1832 (2%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||||||||| || |||| || || ||||||||||| |||||||| || |
Sbjct 148664 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 148605
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| || | ||||| || | |||| | || || | ||||
Sbjct 148604 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 148545
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||| | || || || ||||||||| || || || || ||||| | |
Sbjct 148544 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 148488
Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041
|| | | || | |||||||| |||||| |||| | ||| | || || |
Sbjct 148487 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 148428
Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 118098
| | ||| || ||||| || ||| || | | |||| | | ||||||| | |
Sbjct 148427 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 148371
Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 118158
||||| ||||| || | ||| |||| || ||| ||||| || |||||
Sbjct 148370 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACT 148311
Query 118159 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218
| || || ||| || | | || || |||| ||||| ||||| |||||||||||||
Sbjct 148310 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 148251
Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278
| |||||||| || | ||| ||| || |||||||| || | ||| || ||| ||||
Sbjct 148250 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 148191
Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 118338
||| | | | | || | ||||| |||||||||||||| || | | ||
Sbjct 148190 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 148131
Query 118339 CCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 118398
| | |||||| || ||||||| || || || || | || || ||||| | |||| |
Sbjct 148130 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 148071
Query 118399 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 118456
| || ||||| ||| ||||| | | | | | | ||||| || || || |||||
Sbjct 148070 AGGGACCCTCCTCCTTAGCCAACT--GCACCGACATAGTAAGGGCAGCATGGTAGATTGT 148013
Query 118457 TTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA 118516
|| || || || | | || || || || || | | |||
Sbjct 148012 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 147953
Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576
| || ||||||| ||||| || |||||||| ||||| ||||| || | ||| ||
Sbjct 147952 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 147893
Query 118577 CTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 118636
|| || || || || || || || ||| || | || || || ||
Sbjct 147892 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 147833
Query 118637 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 118696
|||||||| |||| || || ||||| | | | || | | | ||| | | | |
Sbjct 147832 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 147776
Query 118697 AT---ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753
| | | || | ||| | || ||||| |||||||||| | ||| || | |
Sbjct 147775 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 147716
Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813
|||||| || || || ||||| | ||| || || ||||| |||| |||||| || ||
Sbjct 147715 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTT 147656
Query 118814 TGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872
| |||| | | | ||||||||||| |||||| | || | || ||||| ||||| |
Sbjct 147655 -GCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 147597
Query 118873 ACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC---AGTGGCGTTGG---CTCGCC 118926
|| ||| || || | ||||| || ||| | || | | | | || |||
Sbjct 147596 CCTCGAGGATGGCATACCAGA-----GCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCC 147542
Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986
| ||| |||||||| ||| | ||| || ||||| ||||| | || | || |
Sbjct 147541 CATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 147483
Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046
| || || || ||||| | |||| ||| | || || || || | ||||||||
Sbjct 147482 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 147423
Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106
|||| || |||||||| || || ||| || || || ||| | ||||| | || |
Sbjct 147422 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 147363
Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166
| || |||| || |||||||| | || ||| |||||||| || || || || | |
Sbjct 147362 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 147303
Query 119167 CGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223
| | | || ||| ||| |||||| || |||| |||||| ||||| |
Sbjct 147302 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 147243
Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT 119283
|||| ||||| |||| |||||| | ||| |||||| || || ||| |||
Sbjct 147242 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 147183
Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343
| || | || ||||| || | |||||| || || ||| ||| ||||| ||||
Sbjct 147182 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 147123
Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403
| | |||| || |||| || || ||||| ||||| | || | ||| |||||||
Sbjct 147122 AGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGC 147063
Query 119404 AGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463
| |||| || | ||| ||||||||||||||||| || || | ||||| |||
Sbjct 147062 AAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGA 147003
Query 119464 ACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521
| | |||| |||||| || ||||||||| | |||| || || || ||
Sbjct 147002 --AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCA 146945
Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581
|| || | | ||| ||||| | ||||| |||||| | || | | || || ||
Sbjct 146944 GATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 146885
Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
| || ||||||| |||||||||||||||
Sbjct 146884 CTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 146853
>seq933
Length=137956
Score = 127 bits (140), Expect = 3e-24
Identities = 333/501 (66%), Gaps = 14/501 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| ||||| || |||||||| ||||| || ||| | |||||||||||||
Sbjct 11530 TAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 11471
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || ||| || | | |||| | ||| ||
Sbjct 11470 AAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAGGCG 11412
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| | ||||||||| || | ||| ||
Sbjct 11411 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 11352
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || ||| | |||| ||| |||||| | || || || | |||| | |
Sbjct 11351 AGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTCCTC 11292
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| || | ||| || | | ||| | | | | ||| || ||| || ||
Sbjct 11291 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGCGAAGTC 11235
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || ||||| |||||| ||||||||
Sbjct 11234 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAG 11175
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || | || | ||| |||||| || ||||| ||
Sbjct 11174 GCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGAC 11115
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
| ||||| |||| | ||||| ||| ||||| |||||| ||| || ||||||
Sbjct 11114 AGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 11058
Query 130201 CATCGCCCACTGCGCCTTTTT 130221
| ||||| | ||||| ||
Sbjct 11057 GAGGGCCCAGTCGGCCTTCTT 11037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618422638035000
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