Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq501 282 5e-71 seq933 138 1e-27 >seq501 Length=177797 Score = 282 bits (312), Expect = 5e-71 Identities = 1146/1783 (64%), Gaps = 57/1783 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | || || || || || |||| ||| Sbjct 146909 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 146968 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| |||||| | || || |||| Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACACTCT 147026 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | | || |||| |||||||||| ||| || || |||| Sbjct 147027 TCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGG 147086 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 |||| ||| | ||||| || | || || | | || ||||| ||||| ||| ||| Sbjct 147087 ACTCTATCGAGGGTATTTACGACACCCTCAAGACCTG--CGCAATGATCTCCAAGATGGC 147144 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 ||| || ||||| | || |||| | | || | ||| ||| || || Sbjct 147145 TGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCAC 147204 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||| || | ||||| |||| ||||| || || ||||| ||| || || || Sbjct 147205 CAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTA 147264 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| ||||| || || | || ||||||| ||||| || Sbjct 147265 CGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTG 147321 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | || || | || |||| ||||| || | || |||| || Sbjct 147322 GCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCG 147381 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || ||| ||||| ||||| || |||||||||||||||||||| || | Sbjct 147382 CGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAA 147441 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || | ||| |||| | || || | || |||||||| |||| | || Sbjct 147442 GAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGG 147501 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTGC 104865 ||||||||| || ||| | ||| |||||||| || | | ||||| |||| Sbjct 147502 TGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCT 147561 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | || ||| || | ||| | || || ||| || ||||||||||||| || | Sbjct 147562 TAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 147615 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || || |||| || || || || ||||| ||||| Sbjct 147616 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTAC 147675 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| ||||| || || ||| | || | | | || ||| || Sbjct 147676 CATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGC 147735 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104 |||||||||||| || || | || | |||| | || || | || || | | | Sbjct 147736 TGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-T 147794 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || |||||||| || || | |||| ||||| |||||| | | Sbjct 147795 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCA 147854 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 ||||| || ||||| || || || || || || ||| | ||||| || | Sbjct 147855 TTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCA 147914 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GAT 105283 ||||||||||||| |||||||| ||||||| ||| || | || || || || || Sbjct 147915 TTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAG 147973 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || ||||| || |||| | ||||| ||||| || || || || || ||| Sbjct 147974 TCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT 148033 Query 105344 G--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 | | || ||| ||||| ||| || ||||| || | || | |||||||| | Sbjct 148034 ACTATGTCGGTGCAG--TTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCC 148091 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 | | ||| || || | || || | || |||||| | | | || || | || || | Sbjct 148092 CTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGG 148151 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||||| ||||| ||||| | |||||| || | ||| | || ||| ||| ||| | | Sbjct 148152 ACTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCG 148211 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || ||| |||| | || |||||||| || ||||| ||||| || |||| Sbjct 148212 CGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCT 148271 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | ||||| || | | | ||| || || |||||| | |||||| Sbjct 148272 ACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTT 148331 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCA 105698 ||| || | |||||| || || ||||| |||||| | | ||||||| | | ||| Sbjct 148332 GGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGTATCA 148391 Query 105699 TGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757 | | || | ||| ||| || || || || | ||||| | || | ||| Sbjct 148392 TTGCCGAGAACGG----TTCTATCCAGAACATCCCCAACATTCCTACCGAGGTGAAGGCA 148447 Query 105758 TTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGAT 105814 |||||| || ||||||||||| | || | | || | | ||||| || || Sbjct 148448 TTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTG---TACAGATGGCTGCCGAC 148504 Query 105815 CGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGA 105872 |||||| |||||| || | |||| ||| | || || |||| | || || | Sbjct 148505 CGTGGTGCCTTCATCGACC--AGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTA 148562 Query 105873 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 || |||| || | |||||| | | |||||| ||||| || ||||| |||| Sbjct 148563 TGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGT 148622 Query 105933 ATTACCTCCGATCTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974 | ||||| || | |||| || |||||| |||||||||| Sbjct 148623 ACTACCTGCGCACACAGGCTGCTGCTGCGCCC-ATTCAGTTCA 148664 >seq933 Length=137956 Score = 138 bits (152), Expect = 1e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788 |||||||| || |||| ||||| || || ||||| | |||||| || ||| ||| Sbjct 11019 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 11078 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || ||||| ||| |||| | | || || || ||| |||||||| |||||| | Sbjct 11079 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 11135 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 ||| ||||| | | || | |||||||||||||| || |||||||| ||||| ||| Sbjct 11136 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 11195 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||||| ||||||||||||||||| || ||| Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 11231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248952515000