Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq501 282 5e-71
seq933 138 1e-27
>seq501
Length=177797
Score = 282 bits (312), Expect = 5e-71
Identities = 1146/1783 (64%), Gaps = 57/1783 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || | || || || || || |||| |||
Sbjct 146909 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 146968
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACACTCT 147026
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| || | | || |||| |||||||||| ||| || || ||||
Sbjct 147027 TCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGG 147086
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|||| ||| | ||||| || | || || | | || ||||| ||||| ||| |||
Sbjct 147087 ACTCTATCGAGGGTATTTACGACACCCTCAAGACCTG--CGCAATGATCTCCAAGATGGC 147144
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
||| || ||||| | || |||| | | || | ||| ||| || ||
Sbjct 147145 TGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCAC 147204
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
||||| || | ||||| |||| ||||| || || ||||| ||| || || ||
Sbjct 147205 CAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTA 147264
Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631
|| | || | ||| ||||| || || | || ||||||| ||||| ||
Sbjct 147265 CGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTG 147321
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| ||| || | || || | || |||| ||||| || | || |||| ||
Sbjct 147322 GCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCG 147381
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||| || || ||| ||||| ||||| || |||||||||||||||||||| || |
Sbjct 147382 CGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAA 147441
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
|| || | ||| |||| | || || | || |||||||| |||| | ||
Sbjct 147442 GAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGG 147501
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTGC 104865
||||||||| || ||| | ||| |||||||| || | | ||||| ||||
Sbjct 147502 TGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCT 147561
Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
| || ||| || | ||| | || || ||| || ||||||||||||| || |
Sbjct 147562 TAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 147615
Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985
|| | |||||| ||||| || || |||| || || || || ||||| |||||
Sbjct 147616 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTAC 147675
Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
||| || ||||| ||||| || || ||| | || | | | || ||| ||
Sbjct 147676 CATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGC 147735
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104
|||||||||||| || || | || | |||| | || || | || || | | |
Sbjct 147736 TGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-T 147794
Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164
|| | | || |||||||| || || | |||| ||||| |||||| | |
Sbjct 147795 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCA 147854
Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224
||||| || ||||| || || || || || || ||| | ||||| || |
Sbjct 147855 TTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCA 147914
Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GAT 105283
||||||||||||| |||||||| ||||||| ||| || | || || || || ||
Sbjct 147915 TTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAG 147973
Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343
|| ||||| || |||| | ||||| ||||| || || || || || |||
Sbjct 147974 TCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT 148033
Query 105344 G--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
| | || ||| ||||| ||| || ||||| || | || | |||||||| |
Sbjct 148034 ACTATGTCGGTGCAG--TTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCC 148091
Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461
| | ||| || || | || || | || |||||| | | | || || | || || |
Sbjct 148092 CTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGG 148151
Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
||||||| ||||| ||||| | |||||| || | ||| | || ||| ||| ||| | |
Sbjct 148152 ACTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCG 148211
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
| || ||||| || ||| |||| | || |||||||| || ||||| ||||| || ||||
Sbjct 148212 CGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCT 148271
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | ||||| || | | | ||| || || |||||| | ||||||
Sbjct 148272 ACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTT 148331
Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCA 105698
||| || | |||||| || || ||||| |||||| | | ||||||| | | |||
Sbjct 148332 GGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGTATCA 148391
Query 105699 TGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757
| | || | ||| ||| || || || || | ||||| | || | |||
Sbjct 148392 TTGCCGAGAACGG----TTCTATCCAGAACATCCCCAACATTCCTACCGAGGTGAAGGCA 148447
Query 105758 TTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGAT 105814
|||||| || ||||||||||| | || | | || | | ||||| || ||
Sbjct 148448 TTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTG---TACAGATGGCTGCCGAC 148504
Query 105815 CGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGA 105872
|||||| |||||| || | |||| ||| | || || |||| | || || |
Sbjct 148505 CGTGGTGCCTTCATCGACC--AGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTA 148562
Query 105873 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932
|| |||| || | |||||| | | |||||| ||||| || ||||| ||||
Sbjct 148563 TGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGT 148622
Query 105933 ATTACCTCCGATCTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974
| ||||| || | |||| || |||||| ||||||||||
Sbjct 148623 ACTACCTGCGCACACAGGCTGCTGCTGCGCCC-ATTCAGTTCA 148664
>seq933
Length=137956
Score = 138 bits (152), Expect = 1e-27
Identities = 161/216 (75%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788
|||||||| || |||| ||||| || || ||||| | |||||| || ||| |||
Sbjct 11019 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 11078
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| ||||| ||| |||| | | || || || ||| |||||||| |||||| |
Sbjct 11079 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 11135
Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908
||| ||||| | | || | |||||||||||||| || |||||||| ||||| |||
Sbjct 11136 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 11195
Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||||||||| ||||||||||||||||| || |||
Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 11231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583248952515000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |