Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1347 143 8e-29
seq1539 138 3e-27
seq1198 104 7e-17
>seq1347
Length=243407
Score = 143 bits (158), Expect = 8e-29
Identities = 467/723 (65%), Gaps = 2/723 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| || ||||| || ||||| || || || | |||||| || || || || |||
Sbjct 219195 GCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCT 219136
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| ||||| || | || || || | || || || || ||||| || || || ||
Sbjct 219135 GGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCTGCCATC 219076
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || |||| || || ||| | |||
Sbjct 219075 GCCTACGGTCTTGACAAGAAGGCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGT 219016
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || |||| ||||| || || || ||||| |
Sbjct 219015 GGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTTAAGTCT 218956
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
|| |||||||| || || | ||||| || || || || || ||||||||| || ||
Sbjct 218955 ACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTC 218896
Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968
|| || || || ||||| ||||| || | ||| | || | | || ||||
Sbjct 218895 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTATCCACCAACGCCCGCGCTCTGCG 218837
Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028
|| || | || || || || ||||| ||||| | | || || || |||| |||||
Sbjct 218836 CCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGCCCAGACCTC 218777
Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088
||| || || || || || || |||| || |||| | || || || ||||| ||
Sbjct 218776 TATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCG 218717
Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148
||||| || | || ||| || || | | || || | || || || || |
Sbjct 218716 CTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCT 218657
Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208
| || || || || ||| ||| | | || | || | || || ||||| ||
Sbjct 218656 CACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCAC 218597
Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268
||||| || | || || | | || || | || || ||||| || || |
Sbjct 218596 CCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGAGCCCAACAA 218537
Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328
|| || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | ||
Sbjct 218536 GTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTC 218477
Query 350329 TGG 350331
|||
Sbjct 218476 TGG 218474
>seq1539
Length=122776
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || || || ||||| || || || ||
Sbjct 50824 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTC 50765
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||||||||| | ||||||||||||||
Sbjct 50764 CGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGG 50705
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || ||||| || |||||||| |||| || ||||| || || | |||||| | ||
Sbjct 50704 AGGGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTC 50645
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| || || || | ||||| || || || || || ||
Sbjct 50644 AACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 50606
Score = 120 bits (132), Expect = 9e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || |||||||| || ||
Sbjct 50545 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTC 50486
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| ||||| ||||| || ||
Sbjct 50485 GGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 50426
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || || || || || | |||||| | ||
Sbjct 50425 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTC 50366
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720
|| || || || | ||||| ||||| | ||||
Sbjct 50365 GACCTCCAGAGTGATGGTCTTGCCGGTGACTGTT 50332
Score = 116 bits (128), Expect = 1e-20
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || || || ||||| || ||||| || || || || ||
Sbjct 51283 TTACTGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTA 51224
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| | || || || || || | ||| ||||||||||| || ||||| ||||||||
Sbjct 51223 ATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATC 51164
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
||| || || || || || || || || || | || ||||| ||||||| || || |
Sbjct 51163 AGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGA 51104
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | |||| ||||||||| || | || || || || || |||||
Sbjct 51103 CTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
>seq1198
Length=63640
Score = 104 bits (114), Expect = 7e-17
Identities = 102/131 (78%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | ||||||||| || |||||||| ||
Sbjct 57598 CGAGGAACACCAAGCGTGACGTTC---TTGGAAGAAACACCAGCGAAATGGAAAGTGTTC 57542
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
| || | || |||| |||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 57541 AACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACGCCCACCATTTCA 57482
Query 377578 CCAGGATTGAC 377588
|||||| ||||
Sbjct 57481 CCAGGACTGAC 57471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515222851929875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |