Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1347 143 8e-29 seq1539 138 3e-27 seq1198 104 7e-17 >seq1347 Length=243407 Score = 143 bits (158), Expect = 8e-29 Identities = 467/723 (65%), Gaps = 2/723 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || | |||||| || || || || ||| Sbjct 219195 GCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCT 219136 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | || || || | || || || || ||||| || || || || Sbjct 219135 GGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCTGCCATC 219076 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || |||| || || ||| | ||| Sbjct 219075 GCCTACGGTCTTGACAAGAAGGCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGT 219016 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| ||||| || || || ||||| | Sbjct 219015 GGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTTAAGTCT 218956 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || || | ||||| || || || || || ||||||||| || || Sbjct 218955 ACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTC 218896 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 || || || || ||||| ||||| || | ||| | || | | || |||| Sbjct 218895 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTATCCACCAACGCCCGCGCTCTGCG 218837 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 || || | || || || || ||||| ||||| | | || || || |||| ||||| Sbjct 218836 CCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGCCCAGACCTC 218777 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||| || || || || || || |||| || |||| | || || || ||||| || Sbjct 218776 TATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCG 218717 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 ||||| || | || ||| || || | | || || | || || || || | Sbjct 218716 CTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCT 218657 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 | || || || || ||| ||| | | || | || | || || ||||| || Sbjct 218656 CACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCAC 218597 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||| || | || || | | || || | || || ||||| || || | Sbjct 218596 CCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGAGCCCAACAA 218537 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 || || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || Sbjct 218536 GTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTC 218477 Query 350329 TGG 350331 ||| Sbjct 218476 TGG 218474 >seq1539 Length=122776 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || || || ||||| || || || || Sbjct 50824 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTC 50765 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||||||||| | |||||||||||||| Sbjct 50764 CGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGG 50705 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || |||||||| |||| || ||||| || || | |||||| | || Sbjct 50704 AGGGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTC 50645 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||| || || || || || || Sbjct 50644 AACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 50606 Score = 120 bits (132), Expect = 9e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || |||||||| || || Sbjct 50545 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTC 50486 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 50485 GGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 50426 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || || || || || | |||||| | || Sbjct 50425 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTC 50366 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || || | ||||| ||||| | |||| Sbjct 50365 GACCTCCAGAGTGATGGTCTTGCCGGTGACTGTT 50332 Score = 116 bits (128), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || || || ||||| || ||||| || || || || || Sbjct 51283 TTACTGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTA 51224 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | || || || || || | ||| ||||||||||| || ||||| |||||||| Sbjct 51223 ATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATC 51164 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || || || || || | || ||||| ||||||| || || | Sbjct 51163 AGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGA 51104 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | |||| ||||||||| || | || || || || || ||||| Sbjct 51103 CTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050 >seq1198 Length=63640 Score = 104 bits (114), Expect = 7e-17 Identities = 102/131 (78%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||||||| || |||||||| || Sbjct 57598 CGAGGAACACCAAGCGTGACGTTC---TTGGAAGAAACACCAGCGAAATGGAAAGTGTTC 57542 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | || |||| |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 57541 AACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACGCCCACCATTTCA 57482 Query 377578 CCAGGATTGAC 377588 |||||| |||| Sbjct 57481 CCAGGACTGAC 57471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515222851929875