Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq501 262 4e-65
seq926 136 4e-27
>seq501
Length=177797
Score = 262 bits (290), Expect = 4e-65
Identities = 517/758 (68%), Gaps = 24/758 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | || ||| |||||| || ||| ||| ||||| |||
Sbjct 146922 TCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 146981
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| | ||| ||| |||| ||| || |||||| | || || || |||||||||||||
Sbjct 146982 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTA 147038
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | ||| |||| |||||||| || | ||||| || ||||| ||||| |
Sbjct 147039 CCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGG 147098
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| || ||||| || |||||| || || ||||||||| | | ||||| || |||
Sbjct 147099 GTATTTACGACACCCTCAAGACCTGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTC 147158
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || || | || |||| || | |||| | || || || || ||| | |
Sbjct 147159 TCAACG--TCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCAATGGCACCTC 147216
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || ||||| || |||||||| ||||| || ||||| || ||||||||| |||||||
Sbjct 147217 CAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGG 147276
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| ||||| || | || |||||||| |||||||| ||||||||||| | |
Sbjct 147277 TGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTT 147336
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|| ||| | || ||||| ||| || || | |||||| | ||| ||||||||| ||
Sbjct 147337 CGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTT 147396
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||||| ||||| || || ||||||||| | | || || ||| ||| || |||
Sbjct 147397 CCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGAC 147456
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|| |||||||| || |||||||| || | | | | || ||||||||||||||| | |
Sbjct 147457 TCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTG-CTACGGTGAGGAGTTCGAGG 147515
Query 53787 AGATGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840
| || || ||||| ||| | |||| ||| |||| | ||||| |
Sbjct 147516 CCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGC------AAGACTCTTAAGGCCC 147569
Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900
|| | ||| |||| |||||| || || ||||| || | || | |||| ||
Sbjct 147570 AAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCTCT 147629
Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||||||| | | |||| || |||||||||||||||
Sbjct 147630 ACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAAC 147667
Score = 113 bits (124), Expect = 5e-20
Identities = 543/849 (64%), Gaps = 32/849 (4%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| || || | ||||| ||| ||||| ||| | ||||
Sbjct 147797 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 147856
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
|| || |||||||| | | ||| ||||| |||| | || ||||| |||||
Sbjct 147857 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 147916
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | || || |||| || ||| | |||||||||| ||
Sbjct 147917 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGCATGCCCTTCGAGTCT 147976
Query 55277 GAACCTG---CTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332
|||| |||| || | ||| || | || ||| || | |||||| ||| || ||
Sbjct 147977 ---CCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACA-ATCTACCATGCTGCCCT 148032
Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392
|||| || |||||| | ||||| ||||| |||||| | | ||| ||
Sbjct 148033 TACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 148092
Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG-- 55444
| | |||| ||||||||| ||| | ||| | ||| || || | | |
Sbjct 148093 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 148152
Query 55445 -TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGC 55503
| ||| ||||| | | || | | || | |||||||| |||||||| ||
Sbjct 148153 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 148212
Query 55504 GCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTA 55563
||| ||||| || || || |||||||| |||||||||| ||| |||||||| ||
Sbjct 148213 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 148272
Query 55564 CACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCA 55623
||| ||||||| |||| || || ||| || || |||||| | |||||
Sbjct 148273 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTTG 148332
Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT- 55678
||| | |||||||| | || |||| ||| | || |||| || ||
Sbjct 148333 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGTATC 148390
Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGA 55734
|||| |||||| || ||||||| | | |||||| | | | | ||||
Sbjct 148391 ATTGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCTACCGAGG-TGAAGGC 148446
Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794
| ||| ||| || ||||| || | ||| | | | | ||| ||| || ||
Sbjct 148447 ATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATGGCTGCCGACCG 148506
Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854
|||||| | |||||||||||| ||||| || |||||| |||| || | || | |||
Sbjct 148507 TGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTATGGG 148566
Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914
|||| | | | |||||||| || |||||| || || |||||||| ||||||||
Sbjct 148567 CAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACTA 148626
Query 55915 TCTGCGGAC 55923
||||| ||
Sbjct 148627 CCTGCGCAC 148635
>seq926
Length=149626
Score = 136 bits (150), Expect = 4e-27
Identities = 201/285 (71%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
|||||||| | ||||| || || ||||| || || || | || || | ||| |||
Sbjct 80422 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 80481
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| || ||| | |||||||| ||||||||| |||||||| | | | || ||
Sbjct 80482 GGCTCCAGACAGTTAATGTTGTTGGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTC 80541
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||| ||| ||||||||||||| || | ||||||||| | ||||| || |||||
Sbjct 80542 TGCTGAAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAAT 80601
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| ||| | ||||||| |||||| ||||||||| || ||||| |||
Sbjct 80602 TCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAACAGGCGTAGATAACCTTACGC 80661
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|| || |||| || || || ||| ||| || || ||| ||
Sbjct 80662 TGACCAGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGCATG 80706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547204884675000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |