Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq501 262 4e-65 seq926 136 4e-27 >seq501 Length=177797 Score = 262 bits (290), Expect = 4e-65 Identities = 517/758 (68%), Gaps = 24/758 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||| |||||| || ||| ||| ||||| ||| Sbjct 146922 TCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 146981 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || |||||| | || || || ||||||||||||| Sbjct 146982 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTA 147038 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| |||| |||||||| || | ||||| || ||||| ||||| | Sbjct 147039 CCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGG 147098 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || ||||| || |||||| || || ||||||||| | | ||||| || ||| Sbjct 147099 GTATTTACGACACCCTCAAGACCTGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTC 147158 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || || | || |||| || | |||| | || || || || ||| | | Sbjct 147159 TCAACG--TCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCAATGGCACCTC 147216 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||||| || |||||||| ||||| || ||||| || ||||||||| ||||||| Sbjct 147217 CAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGG 147276 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || |||||||| |||||||| ||||||||||| | | Sbjct 147277 TGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTT 147336 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || ||| | || ||||| ||| || || | |||||| | ||| ||||||||| || Sbjct 147337 CGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTT 147396 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| ||||| || || ||||||||| | | || || ||| ||| || ||| Sbjct 147397 CCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGAC 147456 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| || |||||||| || | | | | || ||||||||||||||| | | Sbjct 147457 TCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTG-CTACGGTGAGGAGTTCGAGG 147515 Query 53787 AGATGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | || || ||||| ||| | |||| ||| |||| | ||||| | Sbjct 147516 CCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGC------AAGACTCTTAAGGCCC 147569 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || || ||||| || | || | |||| || Sbjct 147570 AAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCTCT 147629 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||| | | |||| || ||||||||||||||| Sbjct 147630 ACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAAC 147667 Score = 113 bits (124), Expect = 5e-20 Identities = 543/849 (64%), Gaps = 32/849 (4%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| || || | ||||| ||| ||||| ||| | |||| Sbjct 147797 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 147856 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 || || |||||||| | | ||| ||||| |||| | || ||||| ||||| Sbjct 147857 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 147916 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | || || |||| || ||| | |||||||||| || Sbjct 147917 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGCATGCCCTTCGAGTCT 147976 Query 55277 GAACCTG---CTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332 |||| |||| || | ||| || | || ||| || | |||||| ||| || || Sbjct 147977 ---CCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACA-ATCTACCATGCTGCCCT 148032 Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392 |||| || |||||| | ||||| ||||| |||||| | | ||| || Sbjct 148033 TACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 148092 Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG-- 55444 | | |||| ||||||||| ||| | ||| | ||| || || | | | Sbjct 148093 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 148152 Query 55445 -TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGC 55503 | ||| ||||| | | || | | || | |||||||| |||||||| || Sbjct 148153 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 148212 Query 55504 GCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTA 55563 ||| ||||| || || || |||||||| |||||||||| ||| |||||||| || Sbjct 148213 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 148272 Query 55564 CACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCA 55623 ||| ||||||| |||| || || ||| || || |||||| | ||||| Sbjct 148273 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCTTG 148332 Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT- 55678 ||| | |||||||| | || |||| ||| | || |||| || || Sbjct 148333 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGTATC 148390 Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGA 55734 |||| |||||| || ||||||| | | |||||| | | | | |||| Sbjct 148391 ATTGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCTACCGAGG-TGAAGGC 148446 Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794 | ||| ||| || ||||| || | ||| | | | | ||| ||| || || Sbjct 148447 ATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATGGCTGCCGACCG 148506 Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854 |||||| | |||||||||||| ||||| || |||||| |||| || | || | ||| Sbjct 148507 TGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTATGGG 148566 Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 |||| | | | |||||||| || |||||| || || |||||||| |||||||| Sbjct 148567 CAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACTA 148626 Query 55915 TCTGCGGAC 55923 ||||| || Sbjct 148627 CCTGCGCAC 148635 >seq926 Length=149626 Score = 136 bits (150), Expect = 4e-27 Identities = 201/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 |||||||| | ||||| || || ||||| || || || | || || | ||| ||| Sbjct 80422 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 80481 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| || ||| | |||||||| ||||||||| |||||||| | | | || || Sbjct 80482 GGCTCCAGACAGTTAATGTTGTTGGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTC 80541 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||| ||| ||||||||||||| || | ||||||||| | ||||| || ||||| Sbjct 80542 TGCTGAAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAAT 80601 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| ||| | ||||||| |||||| ||||||||| || ||||| ||| Sbjct 80602 TCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAACAGGCGTAGATAACCTTACGC 80661 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || || |||| || || || ||| ||| || || ||| || Sbjct 80662 TGACCAGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGCATG 80706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204884675000