Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1539 109 5e-19 >seq1539 Length=122776 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || || || || ||| | || Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || ||||| || ||||| || Sbjct 50882 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 50941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || ||||||| || || | || || |||||| Sbjct 50942 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 51001 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || | || | ||| |||| || || || Sbjct 51002 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGTAT 51051 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | ||||| | || || || | || Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || |||||||| || ||||| || || ||||| Sbjct 51110 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 51169 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || |||||||| ||| || ||| | |||||||||| Sbjct 51170 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAAC 51229 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 51230 ATCCAGAAGGAGTCAAC 51246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909565720000