Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1539 93.3 3e-14 seq1045 84.2 1e-11 >seq1539 Length=122776 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || ||||| || || || | || ||||| || || Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || || ||||| Sbjct 51110 GACACGATTGACAATGTTAAGTCGAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGATCA 51168 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||| |||| |||| ||||| | |||||||||| Sbjct 51169 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 51228 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 51229 CATCCAGAAGGAGTCAAC 51246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || ||||| || || || || ||||||||||| ||||| ||| | || || | | Sbjct 50604 TCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCG 50663 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| | || | || ||| ||||| ||||| | || || ||||| || || || Sbjct 50664 ACAATGTCAAGTC-TAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTG 50722 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || ||||| ||||| || || || || | |||||| | || |||||||| ||||| Sbjct 50723 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAG 50782 Query 23800 GAGTCCAC 23807 || ||||| Sbjct 50783 GAATCCAC 50790 >seq1045 Length=66817 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 49905 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 49847 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || ||||| || || || || |||| ||||| | ||| ||||| Sbjct 49846 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 49787 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 49786 CATCCAGAAGGAGTCCAC 49769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002905825500