Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1539 143 6e-29 seq1045 143 6e-29 seq501 95.1 3e-14 >seq1539 Length=122776 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| || || || || | ||||| || | |||||| | |||||| Sbjct 51033 AGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCT 50974 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || | || || |||||||| ||||| || |||||||| Sbjct 50973 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 50914 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| || | ||| || || | |||||| ||| Sbjct 50913 TGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTC 50854 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 50853 TTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || || | |||||| |||| | || | || || Sbjct 50526 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCC 50467 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || |||||||| || ||||| |||||||| Sbjct 50466 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 50407 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| || || |||| || || || | ||||| ||| Sbjct 50406 TGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTC 50347 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 50346 TTGCCGGT 50339 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||||| ||||| || | | ||| | ||||| Sbjct 50805 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 50746 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | ||||| || || || || || ||||||||||| Sbjct 50745 TCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCC 50686 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| |||||||| || |||| || || || | ||||| ||| Sbjct 50685 TGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 50626 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 50625 TTGCCAGT 50618 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||||||| || || | || || Sbjct 51261 AGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 51202 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || || || || || || || || || || ||||||||| Sbjct 51201 TCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCT 51142 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | || || || ||||| || ||| Sbjct 51141 TGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTC 51082 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | |||||| Sbjct 51081 TTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050 >seq1045 Length=66817 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||||||||| || || |||| ||||| |||| || || Sbjct 49744 ACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 49803 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || |||||||| || || || Sbjct 49804 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 49863 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 49864 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 49923 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 49924 GGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 49965 >seq501 Length=177797 Score = 95.1 bits (104), Expect = 3e-14 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| | || || | || || ||||||| |||||||| |||| ||| Sbjct 147663 TTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCG 147604 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | |||||| |||| ||| || ||| || | ||| || || | ||| | | |||| Sbjct 147603 GTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTG 147544 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || | |||||||| ||||| | |||| || || | |||||| ||| | ||| Sbjct 147543 CCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGA 147484 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | ||| |||| ||||| | |||| || ||||||||| Sbjct 147483 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 147424 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||||| |||| |||||| || |||||| Sbjct 147423 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAG 147392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192506371127750