Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq831 87.8 1e-12 >seq831 Length=133518 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||||| || || || || | |||||||||||| || || || || ||||| || |||| Sbjct 81261 GTACTCGGCGCCAAAGTGTCGCCATTGGAACCCATAGACGGGGCCGAGGTCGCCGACTTC 81320 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | || || ||| | || | || || | || |||||| ||||||| ||||| Sbjct 81321 TCGATGAGAGAGGCCGACGCTATCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAAATCTT 81380 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCT 27676 || ||| |||| ||| ||| |||| ||||| ||||||||||||||||| Sbjct 81381 GACGCCCGCCTCGCTCAGCGGCAGAGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCT 81439 Query 27677 CCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | | | |||||| | || ||||| | ||| || ||||||||||||| Sbjct 81440 CGGCAATGACGGC--ACGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 81487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499882025375