Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq501 132 7e-26
>seq501
Length=177797
Score = 132 bits (146), Expect = 7e-26
Identities = 432/669 (65%), Gaps = 8/669 (1%)
Strand=Plus/Minus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014
|||||||| ||||| |||||||| | | |||||| || | | | |||| |||||
Sbjct 147483 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 147424
Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074
||||||||||| ||||| ||||||| || || || |||| | ||||| || ||
Sbjct 147423 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCA 147364
Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134
||||| ||||| | ||| || | | ||| | ||||| || || ||||| ||
Sbjct 147363 TGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATG 147304
Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194
|| | | | || || || || || || ||||| || | || | || ||||||||| |
Sbjct 147303 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAG 147244
Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254
|| | | ||| |||| |||||||| || || ||||| || || | ||| ||| ||
Sbjct 147243 ACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCG 147184
Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314
| ||||| || | | | || || || || |||||||| || || | |||
Sbjct 147183 GTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCG 147124
Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374
|| || | || ||||| |||||||| ||| ||| || |||||| | ||| ||
Sbjct 147123 CAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 147064
Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434
|| ||||| || || || || || || || | ||| ||||| || || ||
Sbjct 147063 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 147004
Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTC-CCATTG 78490
|| | || || | || ||||| || || || | || | |||| || |
Sbjct 147003 AAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAG 146944
Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550
||| || || || |||||||| | ||| ||||| ||||| || | |||| |
Sbjct 146943 ATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 146888
Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610
| |||| | ||| ||| | ||||| || || || || || || | ||| |||||
Sbjct 146887 AAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 146828
Query 78611 TCTCTCGTA 78619
| |||||
Sbjct 146827 GCGGTCGTA 146819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694654689540000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |