Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq501 125 1e-23
>seq501
Length=177797
Score = 125 bits (138), Expect = 1e-23
Identities = 432/670 (64%), Gaps = 8/670 (1%)
Strand=Plus/Minus
Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608
|||||| || ||||| || ||||| | | ||| || || | | | || | |||||
Sbjct 147484 ACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCAT 147425
Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668
||||||||||| ||||| ||||||| || || || |||| | ||||| || ||
Sbjct 147424 GAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCC 147365
Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728
||||| ||||||| || || | | ||| | ||||| || || ||||| ||
Sbjct 147364 ATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGAT 147305
Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788
|| | | |||| || || || || || ||||| || | || | |||||||||||| |
Sbjct 147304 GGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAA 147245
Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848
|| | | ||| |||| || ||||| || || ||||| || || | ||| ||| ||
Sbjct 147244 GACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCC 147185
Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908
|| || || | || || || || || ||||| || ||||| | ||
Sbjct 147184 GGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGC 147125
Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968
||| || | ||||| || || ||||| ||| || || |||||| | ||| ||
Sbjct 147124 GCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAA 147065
Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028
|| ||||| || || || || || || || | ||||||||| || |||||
Sbjct 147064 GCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 147005
Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT--TCTATATC-CCATT 77084
||| | || || | || ||||| || || || || ||| | | || ||
Sbjct 147004 GAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCA 146945
Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144
|||| || |||||||||||||| | ||| ||||| |||| || || |||| |
Sbjct 146944 GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGT 146889
Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204
| |||| | ||| ||| | ||||| || || || || || || | ||| ||||
Sbjct 146888 CAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGT 146829
Query 77205 CTCTTTCGTA 77214
| | |||||
Sbjct 146828 CGCGGTCGTA 146819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712919918520000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |