Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 161 7e-35
seq1539 132 3e-26
seq1103 118 8e-22
>seq1045
Length=66817
Score = 161 bits (178), Expect = 7e-35
Identities = 176/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||
Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| || |||||||| ||||| ||||||| |||||||| || | ||
Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| || ||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCA 49916
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||| | || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 49917 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 49968
>seq1539
Length=122776
Score = 132 bits (146), Expect = 3e-26
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||||||||| |||||| ||||||||||||||| || ||| |||| |||
Sbjct 51258 ACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 51199
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||||| || ||||| || | |||||||||||| | || | || ||||| ||
Sbjct 51198 AATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGG 51139
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | || ||||| | || || ||||||| |||||| ||||
Sbjct 51138 ATCTTCGACTTAACATTGT--CAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCT 51081
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || | ||||| ||||||||||||||
Sbjct 51080 TTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
Score = 125 bits (138), Expect = 5e-24
Identities = 150/202 (74%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| ||||||||||||||||| || | ||| ||| | || ||
Sbjct 50803 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 50744
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || ||||||||||| || |||||||| | ||| | |||||||| |||
Sbjct 50743 AAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTG 50684
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | ||||| || | ||| || ||||| | || || |||
Sbjct 50683 AATCTTAGACTTGACATTGT--CGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 50626
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || || |||||||| ||||
Sbjct 50625 TTGCCAGTAAGGGTCTTGACGA 50604
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || |||||| || |||||||| || | | ||| | || |||
Sbjct 51030 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 50971
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || |||||||||||||| || | ||| | || ||||| |||
Sbjct 50970 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 50911
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||| | ||||| ||||||| ||| || ||||||
Sbjct 50910 ATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTT 50851
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| |||||||| |||||
Sbjct 50850 CCAGTCAATGTCTTGACGAAGATCTGCAT 50822
>seq1103
Length=171845
Score = 118 bits (130), Expect = 8e-22
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| | || || |||||||| ||||| ||||
Sbjct 93389 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 93330
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 93329 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93270
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 93269 --CGATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 93212
Query 44326 GAA 44328
|||
Sbjct 93211 GAA 93209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359983270502625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |