Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 150 4e-31
seq1539 141 2e-28
seq1103 131 4e-25
seq501 93.3 1e-13
>seq1045
Length=66817
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || |||||||| |||||||| || |||
Sbjct 49962 CAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 49903
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 49902 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 49843
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| || || | || || |||| || ||| ||
Sbjct 49842 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATC 49783
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 49782 CAGAAGGAGTCCACTCTCCACCTGGT 49757
>seq1539
Length=122776
Score = 141 bits (156), Expect = 2e-28
Identities = 157/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177921 CTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA 177980
||||||| |||| || || || || || || || ||||| |||||||| || |||
Sbjct 50594 CTCCAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 50653
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| |||||||| || ||||| |||||||||||||| ||||| |||||||| || |||
Sbjct 50654 GATACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAG 50713
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
||||| | ||||| || || || ||||| || ||||| | ||||| | || || |||
Sbjct 50714 CAACGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAAC 50773
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
||||||| ||||| || || || ||||
Sbjct 50774 ATCCAAAAGGAATCCACCCTTCA-CTTG 50800
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || ||||| || ||||| || ||||| ||| || |||
Sbjct 50825 CAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCGGAC 50884
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || || ||||| ||||||||
Sbjct 50885 ACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 50944
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||||||||| ||||| |||||||| | ||| | | || || ||| |
Sbjct 50945 CGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAACATT 51004
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 51005 CAGAAGGAGTCAACTCTTCACCTTGT 51030
Score = 111 bits (122), Expect = 4e-19
Identities = 137/186 (74%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| || ||| || || ||||| ||||| ||
Sbjct 50337 TCACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGT 50396
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || |||||||| |||||||| || ||||||||||| || |
Sbjct 50397 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCA 50456
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || || | || || || || || || |
Sbjct 50457 AGCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTC 50516
Query 178123 ATCTTG 178128
| ||||
Sbjct 50517 A-CTTG 50521
>seq1103
Length=171845
Score = 131 bits (144), Expect = 4e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||||||||| ||
Sbjct 93208 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGAT 93267
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 93268 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 93327
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 93328 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 93387
>seq501
Length=177797
Score = 93.3 bits (102), Expect = 1e-13
Identities = 174/253 (69%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| |||||||||||||||||| ||||| ||||| ||||| || | ||
Sbjct 147667 GTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGT 147608
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
|||| |||||| | || ||| || |||||| | ||||||||| | || || | |
Sbjct 147607 CTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTT-AAGAGTCTTGCGAC 147549
Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
||| ||| | ||||||||| || || | | ||| || ||| ||||||| ||
Sbjct 147548 CCTTGCCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGG 147489
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366
||||||| || ||| |||||||| | |||| |||| | ||| || | ||||| |
Sbjct 147488 CAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCT 147429
Query 214367 TCATGAAAAGGTC 214379
||||||| || ||
Sbjct 147428 TCATGAAGAGATC 147416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203706137940250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |