Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 183 3e-41
seq1103 138 1e-27
seq1539 123 2e-23
seq277 96.9 3e-15
>seq1045
Length=66817
Score = 183 bits (202), Expect = 3e-41
Identities = 182/234 (78%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
||| || || || ||||| | |||||| || || ||| ||||||||| ||||| |||||
Sbjct 49735 ACCACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 49794
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
||| |||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 49795 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 49854
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809
||| | || |||||||||| ||| || ||| || | || | |||||| ||||
Sbjct 49855 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGAC 49912
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||||| | || || || |||||||| || ||||| ||||| |||||||||
Sbjct 49913 TCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966
>seq1103
Length=171845
Score = 138 bits (152), Expect = 1e-27
Identities = 142/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 93389 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 93330
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 93329 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93270
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 93269 CG--ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 93212
Query 41851 GAAA 41854
||||
Sbjct 93211 GAAA 93208
>seq1539
Length=122776
Score = 123 bits (136), Expect = 2e-23
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||||||||| ||||| ||
Sbjct 51048 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 50989
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || |||||||| |||||||| |||| ||||| ||||| | |||
Sbjct 50988 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 50929
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | |||| ||| | | | ||||| || || |
Sbjct 50928 ATGCCCTCCTTGTCC-TGAATCTTGGACTTC-ACGTTGTCGATCGTGTCCGATGATTCGA 50871
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| ||| || || || || |||| ||||| ||||| ||||||||
Sbjct 50870 CCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822
Score = 116 bits (128), Expect = 3e-21
Identities = 152/205 (74%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| |||||||||||| || |||||||||
Sbjct 50541 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 50482
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| || || ||||| ||||| | ||
Sbjct 50481 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 50422
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | || | |||| ||| | | | ||| || ||||| |
Sbjct 50421 ATACCCTCCTTGTCC-TGAATCTTGGACTTC-ACGTTGTCGATAGTATCAGAGGACTCGA 50364
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||||| || || || || || ||
Sbjct 50363 CCTCCAGAGTGATGGTCTTGCCGGT 50339
Score = 82.4 bits (90), Expect = 7e-11
Identities = 153/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||| || ||||| ||||| |||
Sbjct 50820 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAG 50761
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||| || || |||| ||| || || || | ||
Sbjct 50760 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGG 50701
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || ||||||||| ||| | || | ||| || | || | || || |||||
Sbjct 50700 ATGCCTTCCTTGTCC-TGAATCTTAGACTTGACATTGTCG--ATGGTATCAGAGGACTCA 50644
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||||| | || || || || || || || ||||| ||||
Sbjct 50643 ACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 50604
>seq277
Length=45443
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || ||||||||||| |||| || |||||| |||||| || |||
Sbjct 3340 CGCATCGCCCCGCGCTCCGGCCTCGCTGCCAAGAACTTCATCGACACGGGCGCTGGCGTC 3399
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | |||| || | ||||||||||||| |||
Sbjct 3400 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 3452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462294609450000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |