Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1045 183 3e-41 seq1103 138 1e-27 seq1539 123 2e-23 seq277 96.9 3e-15 >seq1045 Length=66817 Score = 183 bits (202), Expect = 3e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | |||||| || || ||| ||||||||| ||||| ||||| Sbjct 49735 ACCACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 49794 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | Sbjct 49795 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 49854 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 ||| | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 49855 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGAC 49912 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 49913 TCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966 >seq1103 Length=171845 Score = 138 bits (152), Expect = 1e-27 Identities = 142/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| | || |||||||||||||||||||| | Sbjct 93389 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 93330 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 93329 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 93270 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 93269 CG--ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 93212 Query 41851 GAAA 41854 |||| Sbjct 93211 GAAA 93208 >seq1539 Length=122776 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| ||||| || Sbjct 51048 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 50989 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 50988 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 50929 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | |||| ||| | | | ||||| || || | Sbjct 50928 ATGCCCTCCTTGTCC-TGAATCTTGGACTTC-ACGTTGTCGATCGTGTCCGATGATTCGA 50871 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || |||| ||||| ||||| |||||||| Sbjct 50870 CCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822 Score = 116 bits (128), Expect = 3e-21 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||||||||| || ||||||||| Sbjct 50541 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 50482 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 50481 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 50422 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | |||| ||| | | | ||| || ||||| | Sbjct 50421 ATACCCTCCTTGTCC-TGAATCTTGGACTTC-ACGTTGTCGATAGTATCAGAGGACTCGA 50364 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||||| || || || || || || Sbjct 50363 CCTCCAGAGTGATGGTCTTGCCGGT 50339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||| || ||||| ||||| ||| Sbjct 50820 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAG 50761 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || |||| ||| || || || | || Sbjct 50760 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGG 50701 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| | || | ||| || | || | || || ||||| Sbjct 50700 ATGCCTTCCTTGTCC-TGAATCTTAGACTTGACATTGTCG--ATGGTATCAGAGGACTCA 50644 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || || ||||| |||| Sbjct 50643 ACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 50604 >seq277 Length=45443 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| |||| || |||||| |||||| || ||| Sbjct 3340 CGCATCGCCCCGCGCTCCGGCCTCGCTGCCAAGAACTTCATCGACACGGGCGCTGGCGTC 3399 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| || | ||||||||||||| ||| Sbjct 3400 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 3452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294609450000