Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 2e-13
>seq6
Length=1110370
Score = 91.5 bits (100), Expect = 2e-13
Identities = 194/289 (67%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || || ||||| || ||| | |||||||| ||||||||||| |||||
Sbjct 70920 ATGTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGG 70861
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| ||||| || | | |||||| || || ||| || || | |
Sbjct 70860 AAGCCGTAGAAGCAGCGGGCCTCAGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAG 70801
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| || || |||||||||||| |||||||| || || | || ||| ||||| ||
Sbjct 70800 TTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTAC 70741
Query 17414 TTTTCGTCCGGTGTAAGAAC-----GCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468
|| || ||| | || | | |||||| | | || || || | ||| | |
Sbjct 70740 TTCTCATCC--TCATTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAGATCAATCT 70683
Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
| || | |||||| ||| |||| | ||||| || ||||| | ||| ||
Sbjct 70682 CCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAGAT 70634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517542054812640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |