Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq11 132 6e-26
seq6 95.1 1e-14
>seq11
Length=827760
Score = 132 bits (146), Expect = 6e-26
Identities = 436/673 (65%), Gaps = 16/673 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || |||| || ||||| | | ||| ||||||| | | |||| |||||
Sbjct 610509 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 610568
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||||||||| ||||||||||| | || || || | || | || || || ||
Sbjct 610569 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCA 610628
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| ||||| | || | | | ||| | ||||| || || | || |||
Sbjct 610629 TGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATG 610688
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | || || || ||||| || ||||| || | ||| | ||| ||||||||| |
Sbjct 610689 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAG 610748
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| |||| ||||| ||||| | |||||||| |||| || || ||
Sbjct 610749 ACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCG 610808
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
| || || || | ||| ||||| || || || ||||| || ||||| | ||
Sbjct 610809 GTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTG 610866
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
|||| || | || || || || ||||| ||| || || |||||| | || |
Sbjct 610867 CGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGA 610926
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| || ||||| || | || || || || || | |||||||| ||||| |
Sbjct 610927 AGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAG 610986
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATCCC 54512
| || | || || | || ||||| |||||||| ||| | || | |||
Sbjct 610987 TGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCC 611046
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
| |||| || || ||||||||||| | ||||||||| ||||| || | ||||||
Sbjct 611047 A--GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 611100
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632
|| | ||||| | ||| ||| | ||||| || || || || || || | ||| |
Sbjct 611101 CGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGA 611160
Query 54633 AGTCTCGTTCGTA 54645
|||| || |||||
Sbjct 611161 AGTCGCGGTCGTA 611173
>seq6
Length=1110370
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| ||||| ||| ||| ||||||||||| | | || | |||||||| || || ||
Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|||||||| ||||| ||||| || ||||| || ||||| || || | ||| ||||||
Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279
|| || || || || || |||||||
Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAA 71105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593717533007040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |