Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq54 120 3e-22 seq10 111 1e-19 seq14 86.0 5e-12 >seq54 Length=312047 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||| || ||||| || Sbjct 98796 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 98737 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| ||||| ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 98736 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 98677 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 98676 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 98617 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || || ||||||||| Sbjct 98616 CTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 98583 >seq10 Length=843860 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || |||||| ||| || ||||| ||||| Sbjct 384180 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 384121 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||| |||||||| |||||||||||||| ||| || || Sbjct 384120 GCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 384061 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||||| || | |||||||| | || | || || || |||| || Sbjct 384060 ACGTTGTCGATCGTGTCCGATGAT-TCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 384002 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 384001 CTTGACGAAGATCTGCAT 383984 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||||||| ||||| ||||| | || |||||| Sbjct 384408 GTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCA 384349 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | ||||||||||||||||| || || ||||||||||||||| || || ||| Sbjct 384348 GCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTA 384289 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| ||||| | || | || || || |||| || Sbjct 384288 ACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTC 384229 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 384228 TTGACGAAGATTTGCAT 384212 Score = 105 bits (116), Expect = 6e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || ||||| ||||| ||| | ||||| ||||| Sbjct 383686 CACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTC 383627 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 383626 AAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 383567 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| || || | | ||||||||| | || | || || Sbjct 383566 AATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTT 383507 Query 118709 GCCGGT 118714 |||||| Sbjct 383506 GCCGGT 383501 >seq14 Length=768254 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || || ||| |||| Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 490781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827502555216