Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 437 8e-118 seq6 143 2e-29 seq10 107 2e-18 seq54 105 6e-18 >seq11 Length=827760 Score = 437 bits (484), Expect = 8e-118 Identities = 1214/1850 (66%), Gaps = 42/1850 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||||||||||||||| | |||||| | || || || Sbjct 609357 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTG 609416 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | |||| | ||||| | || | ||||| ||| ||||| Sbjct 609417 GTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATG 609476 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | || | |||||| || |||||||| || ||| Sbjct 609477 AAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTC 609536 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||||| | | | | ||| || || ||| |||||| || ||||| | | Sbjct 609537 TTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCG 609596 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | || || | Sbjct 609597 GCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAG 609656 Query 22445 AG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGG 22502 || ||| |||| || |||||||||||||| | | ||| || |||||||||||||||| Sbjct 609657 AGCCATG--GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGG 609714 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | |||||||| |||| ||||||| ||| || ||||||| Sbjct 609715 AGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCA 609774 Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620 | ||||| | || || ||||| | | ||||||| |||| | | || |||| | Sbjct 609775 TGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGT 609834 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 | ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | ||| Sbjct 609835 C--CCAGTCCCAGAGATCCGAGGGCTTAACATT---CCACATGTCGTACTGGAGAATGCC 609889 Query 22681 GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740 || | ||| || |||||||| | ||| ||||| | | || | | ||| Sbjct 609890 CTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA 609948 Query 22741 GCTCGCCTCCAACGCGCCGTAA--TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG 22798 | | | | | || | | || || |||||||| || |||||||| | || Sbjct 609949 CCGA-CATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGA 610007 Query 22799 GC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 || || ||| ||| | ||||| || | || ||| || ||||| | |||||| Sbjct 610008 GCTTCAGGAGAC----TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTG 610063 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAG 22910 || || | ||| || || |||| || || || |||| ||| | | | Sbjct 610064 CACACCGAGACCAATGGGGCGGTGGCGCATGTTG----CTGTTGCGGGCCTCCTGGACCG 610119 Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970 | || || ||| || ||||||| | ||| | |||| | || | Sbjct 610120 GGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGT 610179 Query 22971 NNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCG 23027 | |||||||| || ||| ||||| |||| || || | ||| | || Sbjct 610180 GGAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCG 610239 Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 |||| || || || || || |||||||| | | |||||| | || || || || | Sbjct 610240 AGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGA 610299 Query 23088 GATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | ||| |||| || || |||| || ||||||||||||| || ||| | || Sbjct 610300 GGTTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCAT 610356 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||||||||| | || |||| |||||| || | ||||| ||| || ||| | Sbjct 610357 CCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGA 610416 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | || || | || | ||| || || |||| | |||||||| | ||| || Sbjct 610417 GCTTTTGGGCCTTAAGA-GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 610475 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || || || || ||||||| |||||||| || || || | | | || ||||| ||| Sbjct 610476 GCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGA 610535 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | || ||||| || | |||| || ||||| || ||||| ||||| | Sbjct 610536 GTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGG 610595 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || || |||||||| ||||| || ||||| |||||| || ||| |||||||| Sbjct 610596 AAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCG 610655 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || || || ||||| |||||||| || | |||||| || || || | ||| ||||| Sbjct 610656 AAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCA 610715 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| |||||||| || || ||||| || | || | ||||| || |||| ||||||| Sbjct 610716 CCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTG 610775 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| ||| || | || || | || || | | ||| |||| || | Sbjct 610776 GAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGA 610835 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || ||||| || || || || ||||| ||||| || || |||||||| || ||| Sbjct 610836 CCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCC 610895 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| ||||||||| | |||| | ||| || ||||||| || |||| ||| ||| Sbjct 610896 TCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTA 610955 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| ||||| || |||||| || ||| | ||||||| || ||||| Sbjct 610956 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 611015 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || |||||| || |||| || || || || || | ||||| ||||| |||||| Sbjct 611016 GTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATG 611075 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | || ||||||||| | | ||||| || || | || || || | | || || Sbjct 611076 TGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTC 611135 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || | ||||| ||||| || |||| || ||||| || Sbjct 611136 TTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 611185 >seq6 Length=1110370 Score = 143 bits (158), Expect = 2e-29 Identities = 357/535 (67%), Gaps = 18/535 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | |||| ||||| | | | | || | ||||| || | Sbjct 71040 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCG 71099 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 | | || ||||| || ||||| ||||| ||||| || ||| || | || || Sbjct 71100 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 71159 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| |||||||| |||||||| ||||| || ||||||| | || || || Sbjct 71160 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCG 71219 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 ||||||||||| || || || || || ||||| ||||||| ||| |||| |||| Sbjct 71220 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCAC---CTCAA-GAACC 71275 Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | || ||| |||||| || ||| || ||| ||| || | ||| Sbjct 71276 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAG 71334 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || ||||| || ||| |||| || |||||| | ||||| || Sbjct 71335 TTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAG 71394 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTA 58324 ||||||||||| || |||||| | || ||| | | || |||| | || || ||| Sbjct 71395 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTG--CT-CTTGG-CAACGACAAGGTTTA 71450 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 ||| | || || || || |||||| | ||||| || | |||||||| ||||| Sbjct 71451 CAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTT 71510 Query 58385 TTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 || ||||| ||| ||| || ||||| |||||| |||| | | | |||| Sbjct 71511 CTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAACAGCACCAAG 71565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| || || | || ||| Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 |||||||| ||| ||| ||| | | |||| || ||||| | || || Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || |||||||| ||||| || || || || ||||| |||||||| | Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || |||||| | ||||| | ||||| ||||| || || | || Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 70873 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||| | || || || | || ||||| ||||| || || ||| | ||||| Sbjct 70874 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGA 70926 >seq10 Length=843860 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || ||| | || Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || ||||||||| Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| || || ||| ||||||| | ||| || || || ||| Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || |||||||| || || ||| | ||| | || |||| Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGTA 384212 Score = 104 bits (114), Expect = 2e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || || || | || ||||| | || Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || || || ||| Sbjct 384272 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 384331 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || ||||| ||| | || |||||||||| ||| Sbjct 384332 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAAC 384391 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430 || || || || || || ||||| || || || | ||| | |||||| || ||||| || Sbjct 384392 ATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCAGTAAGCGATG 384451 Query 31431 ACGTCG 31436 | ||| Sbjct 384452 GCTTCG 384457 >seq54 Length=312047 Score = 105 bits (116), Expect = 6e-18 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 98579 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 98638 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 98639 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 98698 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || || ||| | Sbjct 98699 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 98758 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || ||||| || ||||| || | ||| | || ||| ||| Sbjct 98759 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTGGTAAGA 98818 Query 31424 AGCG 31427 |||| Sbjct 98819 AGCG 98822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763346500160