Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11 437 8e-118
seq6 143 2e-29
seq10 107 2e-18
seq54 105 6e-18
>seq11
Length=827760
Score = 437 bits (484), Expect = 8e-118
Identities = 1214/1850 (66%), Gaps = 42/1850 (2%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
||||| || || |||||||||||||||||||| | |||||| | || || ||
Sbjct 609357 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTG 609416
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | |||| | ||||| | || | ||||| ||| |||||
Sbjct 609417 GTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATG 609476
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | || | |||||| || |||||||| || |||
Sbjct 609477 AAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTC 609536
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
||||||| | | | | ||| || || ||| |||||| || ||||| | |
Sbjct 609537 TTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCG 609596
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| || || || | |||| ||||| ||| ||| || | || || |
Sbjct 609597 GCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAG 609656
Query 22445 AG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGG 22502
|| ||| |||| || |||||||||||||| | | ||| || ||||||||||||||||
Sbjct 609657 AGCCATG--GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGG 609714
Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562
| ||| | || ||||| | |||||||| |||| ||||||| ||| || |||||||
Sbjct 609715 AGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCA 609774
Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620
| ||||| | || || ||||| | | ||||||| |||| | | || |||| |
Sbjct 609775 TGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGT 609834
Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680
| ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | |||
Sbjct 609835 C--CCAGTCCCAGAGATCCGAGGGCTTAACATT---CCACATGTCGTACTGGAGAATGCC 609889
Query 22681 GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740
|| | ||| || |||||||| | ||| ||||| | | || | | |||
Sbjct 609890 CTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA 609948
Query 22741 GCTCGCCTCCAACGCGCCGTAA--TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG 22798
| | | | | || | | || || |||||||| || |||||||| | ||
Sbjct 609949 CCGA-CATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGA 610007
Query 22799 GC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854
|| || ||| ||| | ||||| || | || ||| || ||||| | ||||||
Sbjct 610008 GCTTCAGGAGAC----TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTG 610063
Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAG 22910
|| || | ||| || || |||| || || || |||| ||| | | |
Sbjct 610064 CACACCGAGACCAATGGGGCGGTGGCGCATGTTG----CTGTTGCGGGCCTCCTGGACCG 610119
Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970
| || || ||| || ||||||| | ||| | |||| | || |
Sbjct 610120 GGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGT 610179
Query 22971 NNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCG 23027
| |||||||| || ||| ||||| |||| || || | ||| | ||
Sbjct 610180 GGAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCG 610239
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|||| || || || || || |||||||| | | |||||| | || || || || |
Sbjct 610240 AGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGA 610299
Query 23088 GATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144
| ||| |||| || || |||| || ||||||||||||| || ||| | ||
Sbjct 610300 GGTTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCAT 610356
Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|||||||||||||| | || |||| |||||| || | ||||| ||| || ||| |
Sbjct 610357 CCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGA 610416
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| || || | || | ||| || || |||| | |||||||| | ||| ||
Sbjct 610417 GCTTTTGGGCCTTAAGA-GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 610475
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
|| || || || ||||||| |||||||| || || || | | | || ||||| |||
Sbjct 610476 GCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGA 610535
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| | || ||||| || | |||| || ||||| || ||||| ||||| |
Sbjct 610536 GTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGG 610595
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || || |||||||| ||||| || ||||| |||||| || ||| ||||||||
Sbjct 610596 AAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCG 610655
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| || || || ||||| |||||||| || | |||||| || || || | ||| |||||
Sbjct 610656 AAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCA 610715
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| |||||||| || || ||||| || | || | ||||| || |||| |||||||
Sbjct 610716 CCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTG 610775
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|| | ||| ||| || | || || | || || | | ||| |||| || |
Sbjct 610776 GAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGA 610835
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| ||||| || || || || ||||| ||||| || || |||||||| || |||
Sbjct 610836 CCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCC 610895
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
||||| ||||||||| | |||| | ||| || ||||||| || |||| ||| |||
Sbjct 610896 TCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTA 610955
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803
| || ||| ||||| || |||||| || ||| | ||||||| || |||||
Sbjct 610956 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 611015
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| |||||| || |||| || || || || || | ||||| ||||| ||||||
Sbjct 611016 GTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATG 611075
Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923
| || ||||||||| | | ||||| || || | || || || | | || ||
Sbjct 611076 TGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTC 611135
Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 611136 TTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 611185
>seq6
Length=1110370
Score = 143 bits (158), Expect = 2e-29
Identities = 357/535 (67%), Gaps = 18/535 (3%)
Strand=Plus/Plus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973
||||||||| || ||| | |||| ||||| | | | | || | ||||| || |
Sbjct 71040 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCG 71099
Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033
| | || ||||| || ||||| ||||| ||||| || ||| || | || ||
Sbjct 71100 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 71159
Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093
||| | ||||| |||||||| |||||||| ||||| || ||||||| | || || ||
Sbjct 71160 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCG 71219
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153
||||||||||| || || || || || ||||| ||||||| ||| |||| ||||
Sbjct 71220 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCAC---CTCAA-GAACC 71275
Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| | | | | || ||| |||||| || ||| || ||| ||| || | |||
Sbjct 71276 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAG 71334
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | || || ||||| || ||| |||| || |||||| | ||||| ||
Sbjct 71335 TTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAG 71394
Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTA 58324
||||||||||| || |||||| | || ||| | | || |||| | || || |||
Sbjct 71395 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTG--CT-CTTGG-CAACGACAAGGTTTA 71450
Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384
||| | || || || || |||||| | ||||| || | |||||||| |||||
Sbjct 71451 CAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTT 71510
Query 58385 TTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439
|| ||||| ||| ||| || ||||| |||||| |||| | | | ||||
Sbjct 71511 CTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAACAGCACCAAG 71565
Score = 95.1 bits (104), Expect = 1e-14
Identities = 197/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||||| || || | || |||
Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|||||||| ||| ||| ||| | | |||| || ||||| | || ||
Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | | || || |||||||| ||||| || || || || ||||| |||||||| |
Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || |||||| | ||||| | ||||| ||||| || || | ||
Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 70873
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| ||| | || || || | || ||||| ||||| || || ||| | |||||
Sbjct 70874 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGA 70926
>seq10
Length=843860
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || ||||| | || || ||| | ||
Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || ||||||||| ||| | || |||||||||
Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || ||||| || || ||| ||||||| | ||| || || || |||
Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || |||||||| || || ||| | ||| | || ||||
Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGTA 384212
Score = 104 bits (114), Expect = 2e-17
Identities = 172/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||| || || || || || | || ||||| | ||
Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || |||||||| ||| | || || || |||
Sbjct 384272 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 384331
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || ||||| || || ||||| ||| | || |||||||||| |||
Sbjct 384332 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAAC 384391
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430
|| || || || || || ||||| || || || | ||| | |||||| || ||||| ||
Sbjct 384392 ATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCAGTAAGCGATG 384451
Query 31431 ACGTCG 31436
| |||
Sbjct 384452 GCTTCG 384457
>seq54
Length=312047
Score = 105 bits (116), Expect = 6e-18
Identities = 170/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 98579 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 98638
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 98639 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 98698
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || || ||| |
Sbjct 98699 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 98758
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423
| ||||| || || || || ||||| || ||||| || | ||| | || ||| |||
Sbjct 98759 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTGGTAAGA 98818
Query 31424 AGCG 31427
||||
Sbjct 98819 AGCG 98822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763346500160
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