Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq6 136 8e-27
seq11 87.8 4e-12
>seq6
Length=1110370
Score = 136 bits (150), Expect = 8e-27
Identities = 301/452 (67%), Gaps = 31/452 (7%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||| ||||| || || || || ||||| |||||||| ||||| ||||| ||||||
Sbjct 71104 GTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGG 71163
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | |||| ||||| || | |||||| ||| |||| ||| | |||
Sbjct 71164 CTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGAC 71223
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGT---------TGAAAAAGGGTTTTGTT 102088
|| ||||| || |||||| || ||| | |||| | || || |
Sbjct 71224 GAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCACCTCAAGAACCG------- 71276
Query 102089 GATACCCCATCAAGAGAAAGGAT-TCTTGAA----ATTGTCACTGAAGCCGTCCGAATTG 102143
||||| |||| ||| | || | | |||||| || |||||| ||||
Sbjct 71277 ----CCCCAGCAAGC---AGGTTATCGAGGACATCATTGTC---GATGCCGTCAAGATTG 71326
Query 102144 AACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGA 102203
| || || || || || | |||| ||| | | || ||||||| ||| |||
Sbjct 71327 AGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGA 71386
Query 102204 TGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGC 102263
||| ||||||||||| || || || || || ||||||| | || || |||
Sbjct 71387 TGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG 71446
Query 102264 ACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCA 102323
|| || | ||||||||||| || ||||| ||||| ||||| | |||||||
Sbjct 71447 TTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCA 71506
Query 102324 ACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355
|||| ||||||||| | || ||||| || |||
Sbjct 71507 ACTTCTTTGAAAAGCGTGTTGCCGACTACCAA 71538
>seq11
Length=827760
Score = 87.8 bits (96), Expect = 4e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 94408 TCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCAC 94467
|| || |||||||| || |||| ||||| || || | | ||||| ||| |||||||||
Sbjct 610458 TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCAC 610517
Query 94468 TCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC-ACTCTCTCCATGAAGAGATC 94526
|| | ||||||||| || | || | ||| | ||| ||||||| ||||||||||||
Sbjct 610518 TCATTGGGGCACATAAGAGTCC-AGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATC 610576
Query 94527 AGATACCCAGATAGCTGGGAAAAGATC 94553
|| | ||| | ||| ||||||| ||
Sbjct 610577 AGGGATCCAAAGAGCAAGGAAAAGGTC 610603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989577051883340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |