Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq11 131 2e-25
seq6 102 1e-16
>seq11
Length=827760
Score = 131 bits (144), Expect = 2e-25
Identities = 605/950 (64%), Gaps = 30/950 (3%)
Strand=Plus/Plus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| ||||| ||||| || || ||||| | || | | || | || || |||||||||
Sbjct 610239 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 610298
Query 79681 AGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737
||||| |||| ||||| || | || | || || || || ||| |||
Sbjct 610299 AGGTTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCA 610355
Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797
||||| || || ||||| || | || || || | |||| || | || || | ||||
Sbjct 610356 TCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 610415
Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTGTATAT 79854
| | | ||||| | || |||| | ||| | ||| |||||| | |||
Sbjct 610416 AGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTAT 610472
Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914
|| |||||||| || || | ||| | | ||||| || || | || |||||
Sbjct 610473 AAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATA 610532
Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974
| | ||| ||||| | | | ||||| ||||| ||||||||||| |||||||||||
Sbjct 610533 AGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCA 610592
Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034
| || || || | || | ||| || || || ||||| ||||| | ||
Sbjct 610593 AGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAG 610652
Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094
| | | ||| | ||||| || || | || ||||| | | | || || || |||||
Sbjct 610653 TCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTG 610712
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| ||||| || | ||| | ||| ||||||||| | || | | ||| |||| |||||
Sbjct 610713 CCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 610772
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212
||||| || |||||||| |||| || || || | || || || | |||
Sbjct 610773 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTG 610832
Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272
||||| || || || ||||| || ||||| | |||||| || | || || || |
Sbjct 610833 --AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAA 610890
Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332
| ||||| || || || |||||| | || || || ||||| || |
Sbjct 610891 TACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGG 610950
Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392
|| || || || || | |||||||| ||||| || || | || |||| || |
Sbjct 610951 GGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGT 611010
Query 80393 TGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGAATTCCTACCGCGACA 80445
|||| ||||| || ||| | || | | |||| |||| || || ||||||
Sbjct 611011 TGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----CCAACAGCGACA 611063
Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505
||||| | ||||||||| ||||| || | |||||| | | |||| | ||| |||
Sbjct 611064 CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGAT 611123
Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555
| ||||| || || || || || || | ||| ||||| || |||||
Sbjct 611124 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 611173
>seq6
Length=1110370
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| ||| ||||||||||||||| | | || || |||||||| || || ||
Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| ||||| ||||| || ||||| || ||||| || || | ||| |||||
Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAAC 50105
|| || || || || || ||||||||
Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAAC 71104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718263879858720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |