Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq11 143 4e-29
seq6 86.0 8e-12
>seq11
Length=827760
Score = 143 bits (158), Expect = 4e-29
Identities = 616/961 (64%), Gaps = 32/961 (3%)
Strand=Plus/Plus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|||||||| || ||||| ||||| || || ||||| | || ||| || | || ||
Sbjct 610229 CAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGAT 610288
Query 71754 TTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810
|||||||| || || |||| |||||| || | || | || || || ||
Sbjct 610289 CTCAGTGCAGAGGTTGGAGCTACG---GATGGTACCCAGGTTCTTCTGGTTGCTTTTGCG 610345
Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870
||| |||||||| || || || || || | || || || | |||| || | ||
Sbjct 610346 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT 610405
Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCT-TTCGTA 71927
|| | ||||| | | ||||| | | ||||| | ||| | ||| ||||||
Sbjct 610406 GGCATACCAGAGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTA 610462
Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCAT 71986
| ||||| |||||||| || || | ||| | | | | ||||| || ||||
Sbjct 610463 CTTCTCGTATAAGGCCTCGAACTCCTCACCGTA-GCAGTCGGCAAGACCAGGGCACTCAT 610521
Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046
| || ||||| | | ||| ||||| | | | ||||| ||||| ||||||||||| |
Sbjct 610522 TGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGA 610581
Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106
|||||||||| | || || || | || | ||| || || || ||||| |
Sbjct 610582 TCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCA 610641
Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166
|||| | || | | | ||| | ||||| || || | || ||||| | | | || |
Sbjct 610642 GATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGG 610701
Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226
| || ||||| || ||||| || | ||| | ||| ||||||||| | || | | ||| |
Sbjct 610702 GACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGG 610761
Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284
||| ||||| ||||| | |||||||| |||| || || || | || || ||
Sbjct 610762 GAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGC 610821
Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344
|| ||| ||||| || || || ||||| || ||||| | |||||| || |
Sbjct 610822 GGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAG 610879
Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404
|| || || || ||||| ||| || || |||||| | || || || |||||
Sbjct 610880 GGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAG 610939
Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464
|| | || || || || || | |||||||| ||||| || || | ||
Sbjct 610940 CTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCT 610999
Query 72465 AGACAGTAGATTGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGTATTC 72517
|||| || ||||| ||||| || ||| | || | | |||| |||| |
Sbjct 611000 CGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----C 611052
Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577
| || ||||||||||| | ||| ||||| ||||| || | |||||| | | ||||
Sbjct 611053 CAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCA 611112
Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637
| ||| ||| | ||||| || || || || || || | ||| ||||| || ||||
Sbjct 611113 GGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 611172
Query 72638 A 72638
|
Sbjct 611173 A 611173
>seq6
Length=1110370
Score = 86.0 bits (94), Expect = 8e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| |||||||||||| || | | || | |||||||| || || ||
Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| ||||| ||||| || ||||| || || || || || | ||| |||||
Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209
|| || || || || || |||||||
Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAA 71105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134602696480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |