Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 143 4e-29 seq6 86.0 8e-12 >seq11 Length=827760 Score = 143 bits (158), Expect = 4e-29 Identities = 616/961 (64%), Gaps = 32/961 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 |||||||| || ||||| ||||| || || ||||| | || ||| || | || || Sbjct 610229 CAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGAT 610288 Query 71754 TTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||||| || || |||| |||||| || | || | || || || || Sbjct 610289 CTCAGTGCAGAGGTTGGAGCTACG---GATGGTACCCAGGTTCTTCTGGTTGCTTTTGCG 610345 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| |||||||| || || || || || | || || || | |||| || | || Sbjct 610346 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT 610405 Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCT-TTCGTA 71927 || | ||||| | | ||||| | | ||||| | ||| | ||| |||||| Sbjct 610406 GGCATACCAGAGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTA 610462 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCAT 71986 | ||||| |||||||| || || | ||| | | | | ||||| || |||| Sbjct 610463 CTTCTCGTATAAGGCCTCGAACTCCTCACCGTA-GCAGTCGGCAAGACCAGGGCACTCAT 610521 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 | || ||||| | | ||| ||||| | | | ||||| ||||| ||||||||||| | Sbjct 610522 TGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGA 610581 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||||||||| | || || || | || | ||| || || || ||||| | Sbjct 610582 TCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCA 610641 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 |||| | || | | | ||| | ||||| || || | || ||||| | | | || | Sbjct 610642 GATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGG 610701 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || ||||| || ||||| || | ||| | ||| ||||||||| | || | | ||| | Sbjct 610702 GACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGG 610761 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284 ||| ||||| ||||| | |||||||| |||| || || || | || || || Sbjct 610762 GAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGC 610821 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 || ||| ||||| || || || ||||| || ||||| | |||||| || | Sbjct 610822 GGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAG 610879 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 || || || || ||||| ||| || || |||||| | || || || ||||| Sbjct 610880 GGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAG 610939 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 || | || || || || || | |||||||| ||||| || || | || Sbjct 610940 CTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCT 610999 Query 72465 AGACAGTAGATTGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGTATTC 72517 |||| || ||||| ||||| || ||| | || | | |||| |||| | Sbjct 611000 CGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----C 611052 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | || ||||||||||| | ||| ||||| ||||| || | |||||| | | |||| Sbjct 611053 CAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCA 611112 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| | ||||| || || || || || || | ||| ||||| || |||| Sbjct 611113 GGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 611172 Query 72638 A 72638 | Sbjct 611173 A 611173 >seq6 Length=1110370 Score = 86.0 bits (94), Expect = 8e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||||||||||| || | | || | |||||||| || || || Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||| ||||| || ||||| || || || || || | ||| ||||| Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || || || || ||||||| Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAA 71105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134602696480